Evidence map›Paper›PMID 31412257›Full record

ArticleCell reports2019

The Retinal Ganglion Cell Transportome Identifies Proteins Transported to Axons and Presynaptic Compartments in the Visual System In Vivo.

Lucio M Schiapparelli, Sahil H Shah, Yuanhui Ma, Daniel B McClatchy, Pranav Sharma, Jianli Li, John R Yates, Jeffrey L Goldberg, Hollis T Cline

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Activity-Induced Cortical Glutamatergic Neuron Nascent Proteins.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2022
    Article
  7. Article
  8. Article
  9. Quantitative BONCAT Allows Identification of Newly Synthesized Proteins after Optic Nerve Injury.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Review
  16. Advances in Proteomics Allow Insights Into Neuronal Proteomes.Frontiers in molecular neuroscience · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Lucio M SchiapparelliDepartment of Neuroscience and the Dorris Neuroscience Center, Scripps Research Institute, La Jolla, CA 92037, USA.
Sahil H ShahDepartment of Neuroscience and the Dorris Neuroscience Center, Scripps Research Institute, La Jolla, CA 92037, USA; Neuroscience Graduate Program and Medical Scientist Training Program, University of California, San Diego, La Jolla, CA 92093, USA; Byers Eye Institute and Spencer Center for Vision Research, Stanford University, Palo Alto, CA 94303, USA.
Yuanhui MaDepartment of Molecular Medicine, Scripps Research Institute, La Jolla, CA 92037, USA.
Daniel B McClatchyDepartment of Molecular Medicine, Scripps Research Institute, La Jolla, CA 92037, USA.
Pranav SharmaDepartment of Neuroscience and the Dorris Neuroscience Center, Scripps Research Institute, La Jolla, CA 92037, USA.
Jianli LiDepartment of Neuroscience and the Dorris Neuroscience Center, Scripps Research Institute, La Jolla, CA 92037, USA.
John R YatesDepartment of Molecular Medicine, Scripps Research Institute, La Jolla, CA 92037, USA.
Jeffrey L GoldbergByers Eye Institute and Spencer Center for Vision Research, Stanford University, Palo Alto, CA 94303, USA.
Hollis T ClineDepartment of Neuroscience and the Dorris Neuroscience Center, Scripps Research Institute, La Jolla, CA 92037, USA. Electronic address: cline@scripps.edu.
Scripps Research Institute · USStanford University · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007198 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHI, NEIL C, INSEL, PAUL A · 1985 to 2024
$29.3M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI YATES III, JOHN R · 2012 to 2021
$20.7M
Activity-dependent Development of Visual System DevelopmentR01EY011261 · NEI · SCRIPPS RESEARCH INSTITUTE, THE · PI CLINE, HOLLIS T. · 1996 to 2018
$11.1M
Stanford Vision Research CoreP30EY026877 · NEI · STANFORD UNIVERSITY · PI TIRIN MOORE · 2017 to 2026
$8.0M
Core Grant for Vision ResearchP30EY019005 · NEI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI ALBRIGHT, THOMAS D · 2009 to 2018
$7.7M
Quantitative Proteome Analysis of Brain DevelopmentR01MH067880 · NIMH · SCRIPPS RESEARCH INSTITUTE, THE · PI YATES III, JOHN R · 2003 to 2017
$7.1M
Molecular Discovery for Optic Nerve RegenerationU01EY027261 · NEI · STANFORD UNIVERSITY · PI GOLDBERG, JEFFREY L, HUBERMAN, ANDREW D · 2016 to 2019
$3.0M
Development of midbrain circuitryR01EY027437 · NEI · SCRIPPS RESEARCH INSTITUTE, THE · PI CLINE, HOLLIS T. · 2018 to 2020
$1.9M
Exosome-mediated cell-cell signaling in Rett SyndromeR01MH103134 · NIMH · SCRIPPS RESEARCH INSTITUTE, THE · PI CLINE, HOLLIS T., MUOTRI, ALYSSON R. · 2013 to 2016
$1.4M
NEI NIH HHS P30 EY019005NEI NIH HHS P30 EY026877NEI NIH HHS R01 EY011261NEI NIH HHS R01 EY027437NEI NIH HHS U01 EY027261NIGMS NIH HHS P41 GM103533NIMH NIH HHS R01 MH067880NIMH NIH HHS R01 MH103134
6 · The paper itself

Abstract

The brain processes information and generates cognitive and motor outputs through functions of spatially organized proteins in different types of neurons. More complete knowledge of proteins and their distributions within neuronal compartments in intact circuits would help in the understanding of brain function. We used unbiased in vivo protein labeling with intravitreal NHS-biotin for discovery and analysis of endogenous axonally transported proteins in the visual system using tandem mass spectrometric proteomics, biochemistry, and both light and electron microscopy. Purification and proteomic analysis of biotinylated peptides identified ∼1,000 proteins transported from retinal ganglion cells into the optic nerve and ∼575 biotinylated proteins recovered from presynaptic compartments of lateral geniculate nucleus and superior colliculus. Approximately 360 biotinylated proteins were differentially detected in the two retinal targets. This study characterizes axonally transported proteins in the healthy adult visual system by analyzing proteomes from multiple compartments of retinal ganglion cell projections in the intact brain.

Indexed as

Axonal TransportAnimalsMaleOptic NervePresynaptic TerminalsProteomeRatsRats, Sprague-DawleyRetinal Ganglion CellsVisual PathwaysProteomeaxon transportDiDBiTelectron microscopylateral geniculate nucleusNHS-biotinoptic nerveprotein labelingproteomicsretinal ganglion cellsuperior colliculus

Identifiers

PMID31412257
PMCPMC6707540
OpenAlexW2967067107

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.