Evidence map›Paper›PMID 31412239›Full record

ArticleCell reports2019

Ribosome Collisions Result in +1 Frameshifting in the Absence of No-Go Decay.

Carrie L Simms, Liewei L Yan, Jessica K Qiu, Hani S Zaher

Abstract read
In one paragraph

Article in Cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Article
  2. NNature · 2026
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  18. NNature · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Carrie L SimmsDepartment of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA.
Liewei L YanDepartment of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA.
Jessica K QiuDepartment of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA.
Hani S ZaherDepartment of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA. Electronic address: hzaher@wustl.edu.

Funding

THE ROLE OF THE RIBOSOME IN DETERMINING THE FATE OF DAMAGED MRNA-SupplementR01GM112641 · NIGMS · WASHINGTON UNIVERSITY · PI ZAHER, HANI · 2015 to 2024
$3.1M
NIGMS NIH HHS R01 GM112641
6 · The paper itself

Abstract

During translation, an mRNA is typically occupied by multiple ribosomes sparsely distributed across the coding sequence. This distribution, mediated by slow rates of initiation relative to elongation, ensures that they rarely collide with each other, but given the stochastic nature of protein synthesis, collision events do occur. Recent work from our lab suggested that collisions signal for mRNA degradation through no-go decay (NGD). We have explored the impact of stalling on ribosome function when NGD is compromised and found it to result in +1 frameshifting. We used reporters that limit the number of ribosomes on a transcript to show that +1 frameshifting is induced through ribosome collision in yeast and bacteria. Furthermore, we observe a positive correlation between ribosome density and frameshifting efficiency. It is thus tempting to speculate that NGD, in addition to its role in mRNA quality control, evolved to cope with stochastic collision events to prevent deleterious frameshifting events.

Indexed as

Frameshifting, RibosomalProtein BiosynthesisRNA StabilityOpen Reading FramesQuality ControlRibosomal ProteinsRibosomesRNA, FungalRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsRibosomal ProteinsRNA, FungalRNA, MessengerSaccharomyces cerevisiae Proteinscollisionentry tunnelframeshiftmRNA surveillancequality controlribosome

Identifiers

PMID31412239
PMCPMC6701860

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.