Evidence map›Paper›PMID 31411782›Full record

ArticleProtein science : a publication of the Protein Society2019

Identification of the active site residues in ATP-citrate lyase's carboxy-terminal portion.

Vinh H Nguyen, Noreen Singh, Ana Medina, Isabel Usón, Marie E Fraser

Open access · greenAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Article
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  5. Article
  6. Identification of the active site residues in ATP-citrate lyase's carboxy-terminal portion.Protein science : a publication of the Protein Society · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Vinh H NguyenDepartment of Biological Sciences, University of Calgary, Calgary, Alberta, Canada.
Noreen SinghDepartment of Biological Sciences, University of Calgary, Calgary, Alberta, Canada.
Ana MedinaStructural Biology Unit, CSIC, Barcelona, Spain.
Isabel UsónStructural Biology Unit, CSIC, Barcelona, Spain.
Marie E FraserDepartment of Biological Sciences, University of Calgary, Calgary, Alberta, Canada.ORCID 0000-0001-8501-1494
University of Calgary · CAInstitució Catalana de Recerca i Estudis Avançats · ESInstitut de Biologia Molecular de Barcelona · ES

Funding

CIHR
6 · The paper itself

Abstract

ATP-citrate lyase (ACLY) catalyzes production of acetyl-CoA and oxaloacetate from CoA and citrate using ATP. In humans, this cytoplasmic enzyme connects energy metabolism from carbohydrates to the production of lipids. In certain bacteria, ACLY is used to fix carbon in the reductive tricarboxylic acid cycle. The carboxy(C)-terminal portion of ACLY shows sequence similarity to citrate synthase of the tricarboxylic acid cycle. To investigate the roles of residues of ACLY equivalent to active site residues of citrate synthase, these residues in ACLY from Chlorobium limicola were mutated, and the proteins were investigated using kinetics assays and biophysical techniques. To obtain the crystal structure of the C-terminal portion of ACLY, full-length C. limicola ACLY was cleaved, first non-specifically with chymotrypsin and subsequently with Tobacco Etch Virus protease. Crystals of the C-terminal portion diffracted to high resolution, providing structures that show the positions of active site residues and how ACLY tetramerizes.

Indexed as

ATP Citrate (pro-S)-LyaseBinding SitesBiocatalysisChlorobiumCrystallography, X-RayModels, MolecularMutagenesis, Site-DirectedATP Citrate (pro-S)-LyaseCoA-bindingproteolysissite-directed mutagenesis

Identifiers

PMID31411782
PMCPMC6739821
OpenAlexW2969138527

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.