Evidence map›Paper›PMID 31410901›Full record

ArticleThe Plant journal : for cell and molecular biology2019

Phosphoproteomic analysis reveals plant DNA damage signalling pathways with a functional role for histone H2AX phosphorylation in plant growth under genotoxic stress.

Wanda M Waterworth, Michael Wilson, Dapeng Wang, Thomas Nuhse, Stacey Warward, Julian Selley, Christopher E West

Open access · hybridAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
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  3. Epigenetics in the modern era of crop improvements.Science China. Life sciences · 2025
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  5. PsDMAP1/PsTIP60-regulated H4K16ac is required for ROS-dependent virulence adaptation ofProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Review
  8. Seed longevity and genome damage.Bioscience reports · 2024
    Review
  9. Article
  10. Review
  11. The Influence of Edaphic Factors on DNA Damage and Repair in Wild WheatInternational journal of molecular sciences · 2023
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Genome Maintenance Mechanisms at the Chromatin Level.International journal of molecular sciences · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Wanda M WaterworthCentre for Plant Sciences, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK.
Michael WilsonCentre for Plant Sciences, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK.
Dapeng WangLeeds Omics, University of Leeds, Leeds, LS2 9JT, UK.ORCID 0000-0002-9925-4574
Thomas NuhseFaculty of Life Sciences, University of Manchester, Oxford Road, Manchester, M13 9PT, UK.
Stacey WarwardFaculty of Life Sciences, University of Manchester, Oxford Road, Manchester, M13 9PT, UK.
Julian SelleyFaculty of Life Sciences, University of Manchester, Oxford Road, Manchester, M13 9PT, UK.
Christopher E WestCentre for Plant Sciences, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK.ORCID 0000-0003-1853-0969
University of Leeds · GBUniversity of Manchester · GB

Funding

Biotechnology and Biological Sciences Research Council BB/H012346/1Biotechnology and Biological Sciences Research Council BB/S002081/1
6 · The paper itself

Abstract

DNA damage responses are crucial for plant growth under genotoxic stress. Accumulating evidence indicates that DNA damage responses differ between plant cell types. Here, quantitative shotgun phosphoproteomics provided high-throughput analysis of the DNA damage response network in callus cells. MS analysis revealed a wide network of highly dynamic changes in the phosphoprotein profile of genotoxin-treated cells, largely mediated by the ATAXIA TELANGIECTASIA MUTATED (ATM) protein kinase, representing candidate factors that modulate plant growth, development and DNA repair. A C-terminal dual serine target motif unique to H2AX in the plant lineage showed 171-fold phosphorylation that was absent in atm mutant lines. The physiological significance of post-translational DNA damage signalling to plant growth and survival was demonstrated using reverse genetics and complementation studies of h2ax mutants, establishing the functional role of ATM-mediated histone modification in plant growth under genotoxic stress. Our findings demonstrate the complexity and functional significance of post-translational DNA damage signalling responses in plants and establish the requirement of H2AX phosphorylation for plant survival under genotoxic stress.

Indexed as

DNA RepairStress, PhysiologicalAgingArabidopsisArabidopsis ProteinsATP-Binding Cassette TransportersCells, CulturedDNA DamageGene Expression Regulation, PlantGene OntologyGerminationHistonesMass SpectrometryPhosphorylationProteomeSeedsArabidopsis ProteinsATM3 protein, ArabidopsisATP-Binding Cassette TransportersHistonesProteomeSerineATAXIA TELANGIECTASIA MUTATED (ATM)DNA damage responseDNA repairphosphorylationseed

Identifiers

PMID31410901
PMCPMC6900162
OpenAlexW2968583984

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.