Evidence map›Paper›PMID 31410553›Full record

ArticlePlanta2019

Identification, expression, and putative target gene analysis of nuclear factor-Y (NF-Y) transcription factors in tea plant (Camellia sinensis).

Pengjie Wang, Yucheng Zheng, Yongchun Guo, Xuejin Chen, Yun Sun, Jiangfan Yang, Naixing Ye

Abstract read
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In one paragraph

Article in Planta, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
6.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 40 citations in OpenAlex.

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  12. Overexpression of anFrontiers in plant science · 2022
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  13. Identification and Comprehensive Analysis of theInternational journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Pengjie WangCollege of Horticulture, Key Laboratory of Tea Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China.
Yucheng ZhengCollege of Horticulture, Key Laboratory of Tea Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China.
Yongchun GuoCollege of Horticulture, Key Laboratory of Tea Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China.
Xuejin ChenCollege of Horticulture, Key Laboratory of Tea Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China.
Yun SunCollege of Horticulture, Key Laboratory of Tea Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China.
Jiangfan YangCollege of Horticulture, Key Laboratory of Tea Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China. 000q25003@fafu.edu.cn.
Naixing YeCollege of Horticulture, Key Laboratory of Tea Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China. 000q020063@fafu.edu.cn.ORCID http://orcid.org/0000-0003-2955-2813
Fujian Agriculture and Forestry University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MAIN

conclusionGenome-wide identification and characterization of nuclear factor-Y family in tea plants, and their expression profiles and putative targets provide the basis for further elucidation of their biological functions. The nuclear factor-Y (NF-Y) transcription factors (TFs) are crucial regulators of plant growth and physiology. However, the NF-Y TFs in tea plant (Camellia sinensis) have not yet been elucidated, and its biological functions, especially the putative target genes within the genome range, are still unclear. In this study, we identified 35 CsNF-Y encoding genes in the tea plant genome, including 10 CsNF-YAs, 15 CsNF-YBs and 10 CsNF-YCs. Their conserved domains and motifs, phylogeny, duplication event, gene structure, and promoter were subsequently analyzed. Tissue expression analysis revealed that CsNF-Ys exhibited three distinct expression patterns in eight tea tree tissues, among which CsNF-YAs were moderately expressed. Drought and abscisic acid (ABA) treatment indicated that CsNF-YAs may have a greater impact than other subunit members. Furthermore, through the genome-wide investigation of the presence of the CCAAT box, we found that CsNF-Ys may participate in the development of tea plants by regulating target genes of multiple physiological pathways, including photosynthesis, chlorophyll metabolism, fatty acid biosynthesis, and amino acid metabolism pathways. Our findings will contribute to the functional analysis of NF-Y genes in woody plants and the cultivation of high-quality tea plant cultivars.

Indexed as

Abscisic AcidCamellia sinensisCCAAT-Binding FactorDroughtsGenome, PlantPhylogenyPlant Growth RegulatorsPlant ProteinsStress, PhysiologicalAbscisic AcidCCAAT-Binding Factornuclear factor YPlant Growth RegulatorsPlant ProteinsCamellia sinensisDrought stressNF-Y transcription factorTarget genes

Identifiers

PMID31410553
OpenAlexW2969032468

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.