Evidence map›Paper›PMID 31409897›Full record

ArticleOncogene2019

Circular RNAs add diversity to androgen receptor isoform repertoire in castration-resistant prostate cancer.

Subing Cao, Tianfang Ma, Nathan Ungerleider, Claire Roberts, Margaret Kobelski, Lianjin Jin, Monica Concha, Xia Wang, Melody Baddoo, Holly M Nguyen and 11 more

Abstract read
In one paragraph

Article in Oncogene, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 2 pooled it
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 2 syntheses or guidelines pooled it, 45 citations in OpenAlex.

  1. Pooled it
  2. The Emerging Role of Circular RNAs in Prostate Cancer: A Systematic Review.Frontiers in cell and developmental biology · 2021
    Pooled it
  3. Review
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  17. Review
  18. Androgen Receptor-Related Non-coding RNAs in Prostate Cancer.Frontiers in cell and developmental biology · 2021
    Review
  19. Article
  20. hsa_circ_0121582 inhibits leukemia growth by dampening Wnt/β-catenin signaling.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 2 countries.

Subing CaoDepartment of Structural and Cellular Biology, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, LA, USA.
Tianfang MaDepartment of Structural and Cellular Biology, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, LA, USA.
Nathan UngerleiderDepartment of Pathology, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, LA, USA.
Claire RobertsDepartment of Pathology, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, LA, USA.
Margaret KobelskiDepartment of Structural and Cellular Biology, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, LA, USA.
Lianjin JinDepartment of Structural and Cellular Biology, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, LA, USA.
Monica ConchaDepartment of Pathology, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, LA, USA.
Xia WangDepartment of Pathology, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, LA, USA.
Melody BaddooDepartment of Pathology, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, LA, USA.
Holly M NguyenDepartment of Urology, University of Washington, Seattle, WA, USA.
Eva CoreyDepartment of Urology, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-9244-3807
Ladan FazliDepartment of Urologic Sciences, Vancouver Prostate Centre, University of British Columbia, Vancouver, BC, Canada.
Elisa LedetDepartment of Medicine, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, LA, USA.
Rubin ZhangDepartment of Medicine, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, LA, USA.
Jonathan L SilbersteinDepartment of Medicine, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, LA, USA.
Wensheng ZhangDepartment of Computer Science, Bioinformatics Facility of Xavier RCMI Center of Cancer Research, Xavier University of Louisiana, New Orleans, LA, USA.
Kun ZhangDepartment of Computer Science, Bioinformatics Facility of Xavier RCMI Center of Cancer Research, Xavier University of Louisiana, New Orleans, LA, USA.
Oliver SartorDepartment of Medicine, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, LA, USA.
Xuesen DongDepartment of Urologic Sciences, Vancouver Prostate Centre, University of British Columbia, Vancouver, BC, Canada.ORCID http://orcid.org/0000-0002-3115-3371
Erik K FlemingtonDepartment of Pathology, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, LA, USA. erik@tulane.edu.
Yan DongDepartment of Structural and Cellular Biology, Tulane University School of Medicine, Tulane Cancer Center, New Orleans, LA, USA. ydong@tulane.edu.ORCID http://orcid.org/0000-0003-1622-5354
Tulane University · USUniversity of British Columbia · CAUniversity of Washington · USXavier University of Louisiana · US

Funding

TRANSCRIPTOME AND PROTEOME STRATIFICATION OF PROSTATE ADENOCARCINOMA PHENOTYPESP50CA097186 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PETER S NELSON · 2002 to 2026
$58.1M
STABILITY' (symptomatic review during biologic therapy) Review in Inflammatory Bowel DiseaseP20GM103424 · NIGMS · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI Seetharama D Jois · 2012 to 2026
$57.4M
Xavier RCMI Renewal Application-Research Infrastructure CoreU54MD007595 · NIMHD · XAVIER UNIVERSITY OF LOUISIANA · PI Guangdi Wang, Christopher Williams · 2019 to 2026
$41.9M
Steroid Metabolism in Castration-Resistant Prostate CancerP01CA163227 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI PETER S NELSON · 2013 to 2026
$25.0M
"Project 3" MHV68 IncRNA/miRNA interaction in latency and lympomagenesisP01CA214091 · NCI · UNIVERSITY OF FLORIDA · PI Scott A. Tibbetts · 2017 to 2026
$15.9M
Epstein Barr virus antisense transcriptionR01AI106676 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI FLEMINGTON, ERIK K · 2014 to 2018
$1.9M
Intercellular communication in Epstein Barr virus reactivationR01AI101046 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI FLEMINGTON, ERIK K · 2012 to 2016
$1.9M
RPMS1 circular RNAs in EBV malignanciesR01CA243793 · NCI · TULANE UNIVERSITY OF LOUISIANA · PI FLEMINGTON, ERIK K · 2019 to 2023
$1.8M
An inevitable mechanism of resistance to androgen-directed therapyR01CA188609 · NCI · TULANE UNIVERSITY OF LOUISIANA · PI DONG, YAN · 2014 to 2018
$1.6M
Analysis of EBNA1 siRNA for inhibiting NPC tumor growthR21DE017008 · NIDCR · TULANE UNIVERSITY OF LOUISIANA · PI FLEMINGTON, ERIK K · 2005 to 2006
$497k
Assessing the EBV circular RNAomeR21CA236549 · NCI · TULANE UNIVERSITY OF LOUISIANA · PI FLEMINGTON, ERIK K · 2019 to 2020
$362k
NCI NIH HHS P01 CA163227NCI NIH HHS P01 CA214091NCI NIH HHS P50 CA097186NCI NIH HHS R01 CA188609NCI NIH HHS R01 CA243793NCI NIH HHS R21 CA236549NIAID NIH HHS R01 AI101046NIAID NIH HHS R01 AI106676NIDCR NIH HHS R21 DE017008NIGMS NIH HHS P20 GM103424NIMHD NIH HHS U54 MD007595
6 · The paper itself

Abstract

Deregulated expression of circular RNAs (circRNAs) is associated with various human diseases, including many types of cancer. Despite their growing links to cancer, there has been limited characterization of circRNAs in metastatic castration-resistant prostate cancer, the major cause of prostate cancer mortality. Here, through the analysis of an exome-capture RNA-seq dataset from 47 metastatic castration-resistant prostate cancer samples and ribodepletion and RNase R RNA-sequencing of patient-derived xenografts (PDXs) and cell models, we identified 13 circRNAs generated from the key prostate cancer driver gene-androgen receptor (AR). We validated and characterized the top four most abundant, clinically relevant AR circRNAs. Expression of these AR circRNAs was upregulated during castration-resistant progression of PDXs. The upregulation was not due to global increase of circRNA formation in these tumors. Instead, the levels of AR circRNAs correlated strongly with that of the linear AR transcripts (both AR and AR variants) in clinical samples and PDXs, indicating a transcriptional mechanism of regulation. In cultured cells, androgen suppressed the expression of these AR circRNAs and the linear AR transcripts, and the suppression was attenuated by an antiandrogen. Using nuclear/cytoplasmic fractionation and RNA in-situ hybridization assays, we demonstrated predominant cytoplasmic localization of these AR circRNAs, indicating likely cytoplasmic functions. Overall, this is the first comprehensive characterization of circRNAs arising from the AR gene. With greater resistance to exoribonuclease compared to the linear AR transcripts and detectability of AR circRNAs in patient plasma, these AR circRNAs may serve as surrogate circulating markers for AR/AR-variant expression and castration-resistant prostate cancer progression.

Indexed as

Gene Expression Regulation, NeoplasticAnimalsHumansMaleMice, SCIDProstatic Neoplasms, Castration-ResistantProtein IsoformsReceptors, AndrogenRNA, CircularTumor Cells, CulturedXenograft Model Antitumor AssaysAR protein, humanProtein IsoformsReceptors, AndrogenRNA, Circular

Identifiers

PMID31409897
PMCPMC6842090
OpenAlexW2967698866

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.