Evidence map›Paper›PMID 31409850›Full record

ArticleScientific reports2019

Bogotá River anthropogenic contamination alters microbial communities and promotes spread of antibiotic resistance genes.

Carlos Eduardo Posada-Perlaza, Adán Ramírez-Rojas, Paola Porras, Boahemaa Adu-Oppong, Ana-María Botero-Coy, Félix Hernández, Juan M Anzola, Lorena Díaz, Gautam Dantas, Alejandro Reyes and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 42 citations in OpenAlex.

  1. Structure of Bacterial Community with Resistance to Antibiotics in Aquatic Environments. A Systematic Review.International journal of environmental research and public health · 2021
    Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Carlos Eduardo Posada-PerlazaComputational Biology and Microbial Ecology Group, Department of Biological Sciences, Universidad de los Andes, Bogotá, D.C., Colombia.
Adán Ramírez-RojasMolecular Genetics and Bioinformatics, Corporación CorpoGen, Bogotá, D.C., Colombia.
Paola PorrasMolecular Genetics and Antimicrobial Resistance Unit, International Center for Microbial Genomics, Universidad El Bosque, Bogotá, D.C., Colombia.
Boahemaa Adu-OppongCenter for Genome Science and Systems Biology, Washington University School of Medicine, St. Louis, MO, USA.
Ana-María Botero-CoyResearch Institute for Pesticides and Water, University Jaume I, Castellón, Spain.
Félix HernándezResearch Institute for Pesticides and Water, University Jaume I, Castellón, Spain.ORCID http://orcid.org/0000-0003-1268-3083
Juan M AnzolaMolecular Genetics and Bioinformatics, Corporación CorpoGen, Bogotá, D.C., Colombia.
Lorena DíazMolecular Genetics and Antimicrobial Resistance Unit, International Center for Microbial Genomics, Universidad El Bosque, Bogotá, D.C., Colombia.
Gautam DantasCenter for Genome Science and Systems Biology, Washington University School of Medicine, St. Louis, MO, USA.ORCID http://orcid.org/0000-0003-0455-8370
Alejandro ReyesComputational Biology and Microbial Ecology Group, Department of Biological Sciences, Universidad de los Andes, Bogotá, D.C., Colombia. a.reyes@uniandes.edu.co.ORCID http://orcid.org/0000-0003-2907-3265
María Mercedes ZambranoMolecular Genetics and Bioinformatics, Corporación CorpoGen, Bogotá, D.C., Colombia. mzambrano@corpogen.org.ORCID http://orcid.org/0000-0002-0796-4473
CorpoGen (Colombia) · COUniversidad de Los Andes · COUniversidad El Bosque · COUniversitat Jaume I · ESWashington University in St. Louis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The increase in antibiotic resistant bacteria has raised global concern regarding the future effectiveness of antibiotics. Human activities that influence microbial communities and environmental resistomes can generate additional risks to human health. In this work, we characterized aquatic microbial communities and their resistomes in samples collected at three sites along the Bogotá River and from wastewaters at three city hospitals, and investigated community profiles and antibiotic resistance genes (ARGs) as a function of anthropogenic contamination. The presence of antibiotics and other commonly used drugs increased in locations highly impacted by human activities, while the diverse microbial communities varied among sites and sampling times, separating upstream river samples from more contaminated hospital and river samples. Clinically relevant antibiotic resistant pathogens and ARGs were more abundant in contaminated water samples. Tracking of resistant determinants to upstream river waters and city sources suggested that human activities foster the spread of ARGs, some of which were co-localized with mobile genetic elements in assembled metagenomic contigs. Human contamination of this water ecosystem changed both community structure and environmental resistomes that can pose a risk to human health.

Indexed as

Human ActivitiesWater MicrobiologyColombiaDrug Resistance, MicrobialGeologic SedimentsHumansMicrobiotaRiversWater Pollutants, ChemicalWater Pollutants, Chemical

Identifiers

PMID31409850
PMCPMC6692338
OpenAlexW2968101403

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.