Evidence map›Paper›PMID 31409799›Full record

ArticleNature communications2019

Mutations in topoisomerase IIβ result in a B cell immunodeficiency.

Lori Broderick, Shawn Yost, Dong Li, Matthew D McGeough, Laela M Booshehri, Marisela Guaderrama, Susannah D Brydges, Karolina Kucharova, Niraj C Patel, Margaret Harr and 13 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. TOP2B is required for compartment strength changes upon retinoic acid treatment in SH-SY5Y cells.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Article
  9. Topoisomerase 1 is required for the development and function of thymus.Journal of immunology (Baltimore, Md. : 1950) · 2025
    Article
  10. Article
  11. Review
  12. Article
  13. To Break or Not to Break: The Role of TOP2B in Transcription.International journal of molecular sciences · 2023
    Review
  14. Review
  15. Topoisomerases in Immune Cell Development and Function.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 10 institutions in 5 countries.

Lori BroderickDepartment of Pediatrics, University of California at San Diego, La Jolla, CA, 92093, USA. lbroderick@ucsd.edu.
Shawn YostDepartment of Pediatrics, University of California at San Diego, La Jolla, CA, 92093, USA.
Dong LiCenter for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.
Matthew D McGeoughDepartment of Pediatrics, University of California at San Diego, La Jolla, CA, 92093, USA.
Laela M BooshehriDepartment of Pediatrics, University of California at San Diego, La Jolla, CA, 92093, USA.
Marisela GuaderramaDepartment of Pediatrics, University of California at San Diego, La Jolla, CA, 92093, USA.
Susannah D BrydgesRegeneron Pharmaceuticals, Inc., Tarrytown, NY, 10591, USA.
Karolina KucharovaLaboratory of Molecular Immunology, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, 92093, USA.
Niraj C PatelDepartment of Pediatrics, Levine Children's Hospital, Atrium Health, Charlotte, NC, 28203, USA.
Margaret HarrDepartment of Genetics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.
Hakon HakonarsonCenter for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.ORCID http://orcid.org/0000-0003-2814-7461
Elaine ZackaiDepartment of Genetics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.
Ian G CowellInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK.
Caroline A AustinInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK.
Boris HügleGerman Center for Pediatric and Adolescent Rheumatology, Garmisch-Partenkirchen, 82467, Germany.
Corinna GebauerDivision of Neonatology, University Hospital for Children and Adolescents, University of Leipzig, Leipzig, 04109, Germany.
Jianguo ZhangBGI-Shenzhen, Beishan Industrial Zone, Shenzhen, 518083, China.
Xun XuBGI-Shenzhen, Beishan Industrial Zone, Shenzhen, 518083, China.ORCID http://orcid.org/0000-0002-5338-5173
Jian WangBGI-Shenzhen, Beishan Industrial Zone, Shenzhen, 518083, China.
Ben A CrokerDepartment of Pediatrics, University of California at San Diego, La Jolla, CA, 92093, USA.
Kelly A FrazerDepartment of Pediatrics, University of California at San Diego, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0002-6060-8902
Christopher D PutnamDepartment of Medicine, University of California at San Diego, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0002-6145-1265
Hal M HoffmanDepartment of Pediatrics, University of California at San Diego, La Jolla, CA, 92093, USA.
University of California San Diego · USChildren's Hospital of Philadelphia · USChina National GeneBank · CNNewcastle University · GBGerman Center for Pediatric and Adolescent Rheumatology · DEInstitute of Cancer Research · GBLevine Children's Hospital · USLudwig Cancer Research · BERegeneron (United States) · USSanford Burnham Prebys Medical Discovery Institute · US

Funding

Molecular Genetics and Immunoregulatory mechanisms of PFAPA syndromeK08HD075830 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BRODERICK, LORI · 2014 to 2018
$769k
NICHD NIH HHS K08 HD075830
6 · The paper itself

Abstract

B cell development is a highly regulated process involving multiple differentiation steps, yet many details regarding this pathway remain unknown. Sequencing of patients with B cell-restricted immunodeficiency reveals autosomal dominant mutations in TOP2B. TOP2B encodes a type II topoisomerase, an essential gene required to alleviate topological stress during DNA replication and gene transcription, with no previously known role in B cell development. We use Saccharomyces cerevisiae, and knockin and knockout murine models, to demonstrate that patient mutations in TOP2B have a dominant negative effect on enzyme function, resulting in defective proliferation, survival of B-2 cells, causing a block in B cell development, and impair humoral function in response to immunization.

Indexed as

AnimalsB-LymphocytesCell DifferentiationDNA Topoisomerases, Type IIFemaleHumansMaleMiceMice, KnockoutMutationPrimary Immunodeficiency DiseasesSaccharomyces cerevisiaeDNA Topoisomerases, Type II

Identifiers

PMID31409799
PMCPMC6692411
OpenAlexW2967278014

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.