Evidence map›Paper›PMID 31409795›Full record

ArticleNature communications2019

Population dynamics of an Escherichia coli ST131 lineage during recurrent urinary tract infection.

Brian M Forde, Leah W Roberts, Minh-Duy Phan, Kate M Peters, Brittany A Fleming, Colin W Russell, Sara M Lenherr, Jeremy B Myers, Adam P Barker, Mark A Fisher and 6 more

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Whole-genome characterisation of Escherichia coli isolates from older women with urinary tract infection and asymptomatic bacteriuria.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2026
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Bacteriophage-mediated reduction of uropathogenicbioRxiv : the preprint server for biology · 2025
    Article
  15. Article
  16. Article
  17. Article
  18. Observational
  19. Article
  20. Molecular characterization of uropathogenicJournal of veterinary science · 2025
    Article

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Brian M FordeSchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, 4072, Queensland, Australia.ORCID http://orcid.org/0000-0002-2264-4785
Leah W RobertsSchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, 4072, Queensland, Australia.
Minh-Duy PhanSchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, 4072, Queensland, Australia.ORCID http://orcid.org/0000-0002-3426-1044
Kate M PetersSchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, 4072, Queensland, Australia.
Brittany A FlemingDivision of Microbiology and Immunology, Department of Pathology, University of Utah School of Medicine, Salt Lake City, 84132, UT, USA.
Colin W RussellDivision of Microbiology and Immunology, Department of Pathology, University of Utah School of Medicine, Salt Lake City, 84132, UT, USA.
Sara M LenherrGenitourinary Injury and Reconstructive Urology, Department of Surgery, University of Utah, Salt Lake City, 84132, UT, USA.
Jeremy B MyersGenitourinary Injury and Reconstructive Urology, Department of Surgery, University of Utah, Salt Lake City, 84132, UT, USA.
Adam P BarkerARUP Laboratories and Department of Pathology, University of Utah, Salt Lake City, 84112, UT, USA.
Mark A FisherARUP Laboratories and Department of Pathology, University of Utah, Salt Lake City, 84112, UT, USA.
Teik-Min ChongDivision of Genetics and Molecular Biology, Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, 50603, Malaysia.
Wai-Fong YinDivision of Genetics and Molecular Biology, Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, 50603, Malaysia.
Kok-Gan ChanDivision of Genetics and Molecular Biology, Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, 50603, Malaysia.ORCID http://orcid.org/0000-0002-1883-1115
Mark A SchembriSchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, 4072, Queensland, Australia. m.schembri@uq.edu.au.ORCID http://orcid.org/0000-0003-4863-9260
Matthew A MulveyDivision of Microbiology and Immunology, Department of Pathology, University of Utah School of Medicine, Salt Lake City, 84132, UT, USA. mulvey@path.utah.edu.
Scott A BeatsonSchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, 4072, Queensland, Australia. s.beatson@uq.edu.au.ORCID http://orcid.org/0000-0002-1806-3283

Funding

Bacterial Invasion and Trafficking within the BladderR01AI095647 · NIAID · UNIVERSITY OF UTAH · PI MULVEY, MATTHEW A · 2011 to 2015
$1.8M
Mechanisms of ExPEC Persistence within the GutR21AI135918 · NIAID · UNIVERSITY OF UTAH · PI MULVEY, MATTHEW A · 2018 to 2019
$419k
NIAID NIH HHS R01 AI095647NIAID NIH HHS R21 AI135918
6 · The paper itself

Abstract

Recurrent urinary tract infections (rUTIs) are extremely common, with ~ 25% of all women experiencing a recurrence within 1 year of their original infection. Escherichia coli ST131 is a globally dominant multidrug resistant clone associated with high rates of rUTI. Here, we show the dynamics of an ST131 population over a 5-year period from one elderly woman with rUTI since the 1970s. Using whole genome sequencing, we identify an indigenous clonal lineage (P1A) linked to rUTI and persistence in the fecal flora, providing compelling evidence of an intestinal reservoir of rUTI. We also show that the P1A lineage possesses substantial plasmid diversity, resulting in the coexistence of antibiotic resistant and sensitive intestinal isolates despite frequent treatment. Our longitudinal study provides a unique comprehensive genomic analysis of a clonal lineage within a single individual and suggests a population-wide resistance mechanism enabling rapid adaptation to fluctuating antibiotic exposure.

Indexed as

AgedAnti-Bacterial AgentsEscherichia coliEscherichia coli InfectionsFemaleGenome, BacterialGenotypeHumansLongitudinal StudiesPhylogenyRecurrenceUrinary Tract InfectionsWhole Genome SequencingAnti-Bacterial Agents

Identifiers

PMID31409795
PMCPMC6692316

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.