Evidence map›Paper›PMID 31409791›Full record

ArticleScientific data2019

DRAMP 2.0, an updated data repository of antimicrobial peptides.

Xinyue Kang, Fanyi Dong, Cheng Shi, Shicai Liu, Jian Sun, Jiaxin Chen, Haiqi Li, Hanmei Xu, Xingzhen Lao, Heng Zheng

Open access · goldAbstract read
In one paragraph

Article in Scientific data, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 186 papers.

0numbers the graph read from it
0cells of the map it votes in
186citing papers in PubMed
32.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

186 citing papers in PubMed, 378 citations in OpenAlex.

  1. Artificial intelligence catalyzes antimicrobial peptide design.Synthetic and systems biotechnology · 2027
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  15. Article
  16. Pep5-Cpp, a Cyclin D2-Derived Antimicrobial.Molecules (Basel, Switzerland) · 2026
    Article
  17. Article
  18. Article
  19. Review
  20. Review

126 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Xinyue KangSchool of Life Science and Technology, China Pharmaceutical University, Nanjing, 211100, P.R. China.
Fanyi DongSchool of Life Science and Technology, China Pharmaceutical University, Nanjing, 211100, P.R. China.
Cheng ShiSchool of Life Science and Technology, China Pharmaceutical University, Nanjing, 211100, P.R. China.
Shicai LiuState Key Laboratory of Bioelectronics, Southeast University, Nanjing, 210096, P.R. China.
Jian SunSchool of Pharmaceutical Sciences, Wenzhou Medical University, Wenzhou, 325000, P.R. China.
Jiaxin ChenSchool of Life Science and Technology, China Pharmaceutical University, Nanjing, 211100, P.R. China.
Haiqi LiSchool of Life Science and Technology, China Pharmaceutical University, Nanjing, 211100, P.R. China.
Hanmei XuThe Engineering Research Center of Peptide Drug Discovery and Development, China Pharmaceutical University, Nanjing, 211100, P.R. China.
Xingzhen LaoSchool of Life Science and Technology, China Pharmaceutical University, Nanjing, 211100, P.R. China. lao@cpu.edu.cn.
Heng ZhengSchool of Life Science and Technology, China Pharmaceutical University, Nanjing, 211100, P.R. China. zhengh18@hotmail.com.
China Pharmaceutical University · CNSoutheast University · CNWenzhou Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Data Repository of Antimicrobial Peptides (DRAMP, http://dramp.cpu-bioinfor.org/ ) is an open-access comprehensive database containing general, patent and clinical antimicrobial peptides (AMPs). Currently DRAMP has been updated to version 2.0, it contains a total of 19,899 entries (newly added 2,550 entries), including 5,084 general entries, 14,739 patent entries, and 76 clinical entries. The update covers new entries, structures, annotations, classifications and downloads. Compared with APD and CAMP, DRAMP contains 14,040 (70.56% in DRAMP) non-overlapping sequences. In order to facilitate users to trace original references, PubMed_ID of references have been contained in activity information. The data of DRAMP can be downloaded by dataset and activity, and the website source code is also available on dedicatedly designed download webpage. Although thousands of AMPs have been reported, only a few parts have entered clinical stage. In the paper, we described several AMPs in clinical trials, including their properties, indications and clinicaltrials.gov identifiers. Finally, we provide the applications of DRAMP in the development of AMPs.

Indexed as

Databases, ProteinAntimicrobial Cationic PeptidesClinical Trials as TopicComputer GraphicsHumansInternetUser-Computer InterfaceAntimicrobial Cationic Peptides

Identifiers

PMID31409791
PMCPMC6692298
OpenAlexW2965128681

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.