Evidence map›Paper›PMID 31409709›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Characterization of glutamyl-tRNA-dependent dehydratases using nonreactive substrate mimics.

Ian R Bothwell, Dillon P Cogan, Terry Kim, Christopher J Reinhardt, Wilfred A van der Donk, Satish K Nair

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Substrate recognition by a peptide-aminoacyl-tRNA ligase.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Unexpected Transformations during Pyrroloiminoquinone Biosynthesis.Journal of the American Chemical Society · 2024
    Article
  7. Unexpected transformations during pyrroloiminoquinone biosynthesis.bioRxiv : the preprint server for biology · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Chemical communications (Cambridge, England) · 2023
    Article
  12. The mechanism of thia-Michael addition catalyzed by LanC enzymes.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Article
  14. Enzymatic Pyridine Aromatization during Thiopeptide Biosynthesis.Journal of the American Chemical Society · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. The core of the matter.Nature chemical biology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Ian R BothwellDepartment of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801.ORCID 0000-0002-1291-6193
Dillon P CoganDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801.ORCID 0000-0003-4563-2397
Terry KimDepartment of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Christopher J ReinhardtDepartment of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801.ORCID 0000-0001-9992-1253
Wilfred A van der DonkDepartment of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801; vddonk@illinois.edu snair@illinois.edu.ORCID 0000-0002-5467-7071
Satish K NairDepartment of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801; vddonk@illinois.edu snair@illinois.edu.
University of Illinois Urbana-Champaign · USHoward Hughes Medical Institute · US

Funding

Posttranslational Modifications in Natural Product BiosynthesisR01GM058822 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI VAN DER DONK, WILFRED A. · 1999 to 2015
$3.8M
Structural /Mechanistic Study of Lantibiotic Biosynthetic Enzymes & AutoimmunityR01GM079038 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI NAIR, SATISH K · 2006 to 2023
$3.7M
Posttranslational Modifications during Natural Product BiosynthesisR37GM058822 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI VAN DER DONK, WILFRED A. · 2016 to 2025
$2.9M
Examination of the Molecular Properties Underlying the Mechanism, Structure, and Specificity of LanB Enzymes Involved in Lanthipeptide BiosynthesisF32GM117765 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI BOTHWELL, IAN ROGER · 2016 to 2018
$173k
NIGMS NIH HHS F32 GM117765NIGMS NIH HHS R01 GM058822NIGMS NIH HHS R01 GM079038NIGMS NIH HHS R37 GM058822
6 · The paper itself

Abstract

The peptide natural product nisin has been used as a food preservative for 6 decades with minimal development of resistance. Nisin contains the unusual amino acids dehydroalanine and dehydrobutyrine, which are posttranslationally installed by class I lanthipeptide dehydratases (LanBs) on a linear peptide substrate through an unusual glutamyl-tRNA-dependent dehydration of Ser and Thr. To date, little is known about how LanBs catalyze the transfer of glutamate from charged tRNA

Indexed as

AlanineCrystallography, X-RayGlutamic AcidHydro-LyasesNisinProtein DomainsRecombinant ProteinsRNA, Transfer, Amino AcylAlaninedehydroalanineGlutamic AcidHydro-LyasesNisinnisin ARecombinant ProteinsRNA, Transfer, Amino AcyldehydrataselantibioticmechanismnisinX-ray crystallography

Identifiers

PMID31409709
PMCPMC6717260
OpenAlexW2967524995

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.