Evidence map›Paper›PMID 31409672›Full record

ArticleBlood2019

Chromatin occupancy and epigenetic analysis reveal new insights into the function of the GATA1 N terminus in erythropoiesis.

Te Ling, Yehudit Birger, Monika J Stankiewicz, Nissim Ben-Haim, Tomer Kalisky, Avigail Rein, Eitan Kugler, Wei Chen, Chunling Fu, Kevin Zhang and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 49 citations in OpenAlex.

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  14. Leukemogenesis in infants and young children with trisomy 21.Hematology. American Society of Hematology. Education Program · 2022
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 3 countries.

Te LingDivision of Hematology and Oncology, Northwestern University Feinberg School of Medicine, Chicago, IL.
Yehudit BirgerThe Gene Development and Environment Pediatric Research Institute, Pediatric Hemato-Oncology, Edmond and Lily Safra Children's Hospital, Sheba Medical Center, Tel Hashomer, Ramat Gan, Israel.
Monika J StankiewiczDivision of Hematology and Oncology, Northwestern University Feinberg School of Medicine, Chicago, IL.
Nissim Ben-HaimFaculty of Engineering and Institute for Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat Gan, Israel.
Tomer KaliskyFaculty of Engineering and Institute for Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat Gan, Israel.
Avigail ReinThe Gene Development and Environment Pediatric Research Institute, Pediatric Hemato-Oncology, Edmond and Lily Safra Children's Hospital, Sheba Medical Center, Tel Hashomer, Ramat Gan, Israel.
Eitan KuglerThe Gene Development and Environment Pediatric Research Institute, Pediatric Hemato-Oncology, Edmond and Lily Safra Children's Hospital, Sheba Medical Center, Tel Hashomer, Ramat Gan, Israel.
Wei ChenDivision of Hematology and Oncology, Northwestern University Feinberg School of Medicine, Chicago, IL.
Chunling FuBlood Disease Institute, Xuzhou Medical University, Xuzhou, China.
Kevin ZhangDivision of Hematology and Oncology, Northwestern University Feinberg School of Medicine, Chicago, IL.
Hiral PatelDivision of Hematology and Oncology, Northwestern University Feinberg School of Medicine, Chicago, IL.
Jacek W SikoraProteomics Center of Excellence, Northwestern University, Chicago, IL.
Young Ah GooProteomics Center of Excellence, Northwestern University, Chicago, IL.
Neil KelleherDepartment of Chemistry and Molecular Biosciences and Proteomics Center of Excellence, Northwestern University, Evanston, IL; and.
Lihua ZouDepartment of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL.
Shai IzraeliThe Gene Development and Environment Pediatric Research Institute, Pediatric Hemato-Oncology, Edmond and Lily Safra Children's Hospital, Sheba Medical Center, Tel Hashomer, Ramat Gan, Israel.
John D CrispinoDivision of Hematology and Oncology, Northwestern University Feinberg School of Medicine, Chicago, IL.
Northwestern University · USTel Aviv University · ILBar-Ilan University · ILXuzhou Medical College · CN

Funding

TR&D 7: Cell Specific ProteomicsP41GM108569 · NIGMS · NORTHWESTERN UNIVERSITY · PI KELLEHER, NEIL L · 2015 to 2024
$13.6M
GATA1 Mutation in Defective ErythropoiesisR01DK101329 · NIDDK · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CRISPINO, JOHN D · 2013 to 2017
$1.7M
NIDDK NIH HHS R01 DK101329NIGMS NIH HHS P41 GM108569
6 · The paper itself

Abstract

Mutations in GATA1, which lead to expression of the GATA1s isoform that lacks the GATA1 N terminus, are seen in patients with Diamond-Blackfan anemia (DBA). In our efforts to better understand the connection between GATA1s and DBA, we comprehensively studied erythropoiesis in Gata1s mice. Defects in yolks sac and fetal liver hematopoiesis included impaired terminal maturation and reduced numbers of erythroid progenitors. RNA-sequencing revealed that both erythroid and megakaryocytic gene expression patterns were altered by the loss of the N terminus, including aberrant upregulation of Gata2 and Runx1. Dysregulation of global H3K27 methylation was found in the erythroid progenitors upon loss of N terminus of GATA1. Chromatin-binding assays revealed that, despite similar occupancy of GATA1 and GATA1s, there was a striking reduction of H3K27me3 at regulatory elements of the Gata2 and Runx1 genes. Consistent with the observation that overexpression of GATA2 has been reported to impair erythropoiesis, we found that haploinsufficiency of Gata2 rescued the erythroid defects of Gata1s fetuses. Together, our integrated genomic analysis of transcriptomic and epigenetic signatures reveals that, Gata1 mice provide novel insights into the role of the N terminus of GATA1 in transcriptional regulation and red blood cell maturation which may potentially be useful for DBA patients.

Indexed as

Anemia, Diamond-BlackfanAnimalsChromatinEpigenesis, GeneticErythropoiesisGATA1 Transcription FactorMiceMice, Mutant StrainsProtein IsoformsChromatinGata1 protein, mouseGATA1 Transcription FactorProtein Isoforms

Identifiers

PMID31409672
PMCPMC6871310
OpenAlexW2967902689

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.