Evidence map›Paper›PMID 31409301›Full record

ArticleBMC microbiology2019

Development and evaluation of a rapid and sensitive RPA assay for specific detection of Vibrio parahaemolyticus in seafood.

Yunyun Geng, Ke Tan, Libing Liu, Xiao Xia Sun, Baohua Zhao, Jianchang Wang

Abstract readEvaluation Study
In one paragraph

Article in BMC microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
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  11. Rapid Detection ofJournal of microbiology and biotechnology · 2022
    Article
  12. Rapid Detection ofFrontiers in cellular and infection microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yunyun GengDepartment of Pharmacology, Hebei University of Chinese Medicine, No.326 South Xinshi Road, Shijiazhuang, 050091, Hebei, China.
Ke TanCollege of Life Sciences, Hebei Normal University, No.20, Road E. 2nd Ring South, Yuhua District, Shijiazhuang, Hebei Province, 050024, People's Republic of China.
Libing LiuCenter of Inspection and Quarantine, Hebei Entry-Exit Inspection and Quarantine Bureau, No.318 Hepingxilu Road, Shijiazhuang, 050024, Hebei, China.
Xiao Xia SunCenter of Inspection and Quarantine, Hebei Entry-Exit Inspection and Quarantine Bureau, No.318 Hepingxilu Road, Shijiazhuang, 050024, Hebei, China.
Baohua ZhaoCollege of Life Sciences, Hebei Normal University, No.20, Road E. 2nd Ring South, Yuhua District, Shijiazhuang, Hebei Province, 050024, People's Republic of China. zhaobaohua@mail.hebtu.edu.cn.
Jianchang WangCenter of Inspection and Quarantine, Hebei Entry-Exit Inspection and Quarantine Bureau, No.318 Hepingxilu Road, Shijiazhuang, 050024, Hebei, China. jianchangwang1225@126.com.ORCID 0000-0002-5647-0795

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundVibrio parahaemolyticus (V. parahaemolyticus) is a leading cause of food poisoning and is of great importance to public health due to the frequency and seriousness of the diseases. The simple, timely and efficient detection of this pathogen is a major concern worldwide. In this study, we established a simple and rapid method based on recombinase polymerase amplification (RPA) for the determination of V. parahaemolyticus. According to the gyrB gene sequences of V. parahaemolyticus available in GenBank, specific primers and an exo probe were designed for establishing real-time recombinase polymerase amplification (real-time RPA).

resultsThe real-time RPA reaction was performed successfully at 38 °C, and results were obtained within 20 min. The method only detected V. parahaemolyticus and did not show cross-reaction with other bacteria, exhibiting a high level of specificity. The study showed that the detection limit (LOD) of real-time RPA was 1.02 × 10

conclusionThis study describes a simple, rapid, and reliable method for the detection of V. parahaemolyticus, which could potentially be applied in the research laboratory and disease diagnosis.

Indexed as

AnimalsBacterial ProteinsDNA GyraseFishesFood ContaminationOstreidaePolymerase Chain ReactionSeafoodSensitivity and SpecificityVibrio parahaemolyticusBacterial ProteinsDNA GyrasegyrBMolecular detectionReal-time RPAVibrio parahaemolyticus

Identifiers

PMID31409301
PMCPMC6693139

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.