Evidence map›Paper›PMID 31409283›Full record

ArticleBMC genomics2019

Transcriptomic analysis reveals the mechanism of thermosensitive genic male sterility (TGMS) of Brassica napus under the high temperature inducement.

Xin Tang, You-Jin Hao, Jun-Xing Lu, Geng Lu, Tao Zhang

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Xin TangCollege of Life Sciences, Chongqing Normal University, Chongqing, 401331, China.
You-Jin HaoCollege of Life Sciences, Chongqing Normal University, Chongqing, 401331, China.
Jun-Xing LuCollege of Life Sciences, Chongqing Normal University, Chongqing, 401331, China.
Geng LuCollege of Life Sciences, Chongqing Normal University, Chongqing, 401331, China.
Tao ZhangCollege of Life Sciences, Chongqing Normal University, Chongqing, 401331, China. zht2188@126.com.ORCID http://orcid.org/0000-0003-1873-3678
Chongqing Normal University · CN

Funding

National Natural Science Foundation of China 31171588
6 · The paper itself

Abstract

backgroundThe thermo-sensitive genic male sterility (TGMS) of Brassica napus facilitates reproductive researches and hybrid seed production. Considering the complexity and little information about the molecular mechanism involved in B. napus TGMS, comparative transcriptomic analyses were peroformed for the sterile (160S-MS) and fertile (160S-MF) flowers to identify potential crucial genes and pathways associated with TGMS.

resultsIn total, RNA-seq analysis showed that 2202 genes (561 up-regulated and 1641 down-regulated) were significantly differentially expressed in the fertile flowers of 160S-MF at 25 °C when compared the sterile flower of 160S-MS at 15 °C. Detailed analysis revealed that expression changes in genes encoding heat shock proteins, antioxidant, skeleton protein, GTPase and calmodulin might be involved in TGMS of B. napus. Moreover, gene expression of some key members in plant hormone signaling pathways, such as auxin, gibberellins, jasmonic acid, abscisic acid, brassinosteroid signalings, were significantly surppressed in the flowers of 160S, suggesting that these genes might be involved in the regulation in B. napus TGMS. Here, we also found that transcription factor MADS, NFY, HSF, MYB/C and WRKY might play a crucial role in male fertility under the high temperature condition.

conclusionHigh temperature can significant affect gene expression in the flowers. The findings in the current study improve our understanding of B. napus TGMS at the molecular level and also provide an effective foundation for male fertility researches in other important economic crops.

Indexed as

Gene Expression ProfilingTemperatureAbscisic AcidAntioxidantsBrassica napusBrassinosteroidsCyclopentanesGenes, PlantGibberellinsIndoleacetic AcidsOxylipinsPlant Growth RegulatorsPlant InfertilityStress, PhysiologicalAbscisic AcidAntioxidantsBrassinosteroidsCyclopentanesGibberellinsIndoleacetic Acidsjasmonic acidOxylipinsPlant Growth RegulatorsBrassica napusDifferential gene expressionHormone signalingThermo-sensitive genic male sterilityTranscription factor

Identifiers

PMID31409283
PMCPMC6691554
OpenAlexW2968455189

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.