Evidence map›Paper›PMID 31408972›Full record

ArticleViruses2019

Screening of Duck Tembusu Virus NS3 Interacting Host Proteins and Identification of Its Specific Interplay Domains.

Yawen Wang, Shuai Zhang, Yi Tang, Youxiang Diao

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yawen WangCollege of Animal Science and Technology, Shandong Agricultural University, 61 Daizong Road, Tai'an 271018, China.ORCID 0000-0003-1780-418X
Shuai ZhangCollege of Animal Science and Technology, Shandong Agricultural University, 61 Daizong Road, Tai'an 271018, China.
Yi TangCollege of Animal Science and Technology, Shandong Agricultural University, 61 Daizong Road, Tai'an 271018, China. tyck288@163.com.
Youxiang DiaoCollege of Animal Science and Technology, Shandong Agricultural University, 61 Daizong Road, Tai'an 271018, China. yxdiao@163.com.
Shandong Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

NS3 protein is a member of the non-structural protein of duck Tembusu virus (DTMUV), which contains three domains, each of which has serine protease, nucleotide triphosphatase, and RNA helicase activities, respectively. It performs a variety of biological functions that are involved in the regulation of the viral life cycle and host immune response. Based on the yeast two-hybrid system, we successfully transformed pGBKT7-NS3 bait plasmid into Y2H Gold, tested it to prove that it has no self-activation and toxicity, and then hybridized it with the prey yeast strain of the duck embryo fibroblast cDNA library for screening. After high-stringency selection, positive alignment with the National Center for Biotechnology Information database revealed nine potential interactive proteins: MGST1, ERCC4, WIF1, WDR75, ACBD3, PRDX1, RPS7, ND5, and LDHA. The most interesting one (PRDX1) was selected to be verified with full-length NS3 protein and its three domains S7/DEXDc/HELICc using yeast regressive verification and GST Pull-Down assay. It denoted that PRDX1 does indeed interact with HELICc domains of NS3. NS3 is involved in the RNA uncoiling process of viral replication, which may cause mitochondrial overload to create oxidative stress (OS) during DTMUV attack. We deduced that the HELICc domain binding partner PRDX1, which regulates the p38/mitogen-activated protein kinase pathway (p38/MAPK) to avert OS, causing apoptosis, making it possible for viruses to escape host immune responses.

Indexed as

Host-Pathogen InteractionsAnimalsCarrier ProteinsCell LineFlavivirusFlavivirus InfectionsHigh-Throughput Nucleotide SequencingHumansp38 Mitogen-Activated Protein KinasesProtein BindingProtein Interaction Domains and MotifsReactive Oxygen SpeciesRNA, ViralViral Nonstructural ProteinsCarrier Proteinsp38 Mitogen-Activated Protein KinasesReactive Oxygen SpeciesRNA, ViralViral Nonstructural Proteinscellular co-localizationDTMUVGST Pull-Down assayHELICc domains of NS3yeast regressive verificationyeast two-hybrid system

Identifiers

PMID31408972
PMCPMC6722602
OpenAlexW2968494403

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.