Evidence map›Paper›PMID 31408151›Full record

ArticleFEMS yeast research2019

Engineering the expression system for Komagataella phaffii (Pichia pastoris): an attempt to develop a methanol-free expression system.

Shinobu Takagi, Noriko Tsutsumi, Yuji Terui, XiangYu Kong, Hiroya Yurimoto, Yasuyoshi Sakai

Open access · hybridAbstract read
In one paragraph

Article in FEMS yeast research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Shinobu TakagiNovozymes Japan Ltd, CB-6 MTG, 1-3 Nakase, Mihama-ku, Chiba 261-8501, Japan.
Noriko TsutsumiNovozymes Japan Ltd, CB-6 MTG, 1-3 Nakase, Mihama-ku, Chiba 261-8501, Japan.
Yuji TeruiNovozymes Japan Ltd, CB-6 MTG, 1-3 Nakase, Mihama-ku, Chiba 261-8501, Japan.
XiangYu KongNovozymes (China) Investment Co. Ltd, 14 Xinxi Road, Shangdi Zone, Haidian District, 100085 Beijing, China.
Hiroya YurimotoDivision of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto 606-8502, Japan.
Yasuyoshi SakaiDivision of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto 606-8502, Japan.
Kyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The construction of a methanol-free expression system of Komagataella phaffii (Pichia pastoris) was attempted by engineering a strong methanol-inducible DAS1 promoter using Citrobacter braakii phytase production as a model case. Constitutive expression of KpTRM1, formerly PRM1-a positive transcription regulator for methanol-utilization (MUT) genes of K. phaffii,was demonstrated to produce phytase without addition of methanol, especially when a DAS1 promoter was used but not an AOX1 promoter. Another positive regulator, Mxr1p, did not have the same effect on the DAS1 promoter, while it was more effective than KpTrmp1 on the AOX1 promoter. Removing a potential upstream repression sequence (URS) and multiplying UAS1DAS1 in the DAS1 promoter significantly enhanced the yield of C. braakii phytase with methanol-feeding, which surpassed the native AOX1 promoter by 80%. However, multiplying UAS1DAS1 did not affect the yield of methanol-free expression by constitutive KpTrm1p. Another important region to enhance the effect of KpTrm1p under a methanol-free condition was identified in the DAS1 promoter, and was termed ESPDAS1. Nevertheless, methanol-free phytase production using an engineered DAS1 promoter outperformed phytase production with the GAP promoter by 25%. Difference in regulation by known transcription factors on the AOX1 promoter and the DAS1 promoter was also illustrated.

Indexed as

Genetic Engineering6-PhytaseAlcohol OxidoreductasesAldehyde-Ketone TransferasesFungal ProteinsGene ExpressionGene Expression Regulation, FungalPichiaPlasmidsPromoter Regions, GeneticTranscription FactorstRNA Methyltransferases6-Phytasealcohol oxidaseAlcohol OxidoreductasesAldehyde-Ketone Transferasesformaldehyde transketolaseFungal ProteinsN(2),N(2)-dimethylguanosine-26-methyltransferaseTranscription FactorstRNA MethyltransferasesDAS1 promoterKomagataella phaffiiKpTRM1MXR1phytasePichia pastorisPRM1

Identifiers

PMID31408151
PMCPMC6736287
OpenAlexW2968138778

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.