Evidence map›Paper›PMID 31407606›Full record

ArticleAIDS research and human retroviruses2019

A Short-Term Assessment of Nascent HIV-1 Transmission Clusters Among Newly Diagnosed Individuals Using Envelope Sequence-Based Phylogenetic Analyses.

Alexis Kafando, Bouchra Serhir, Florence Doualla-Bell, Eric Fournier, Mohamed Ndongo Sangaré, Christine Martineau, Mohamed Sylla, Annie Chamberland, Mohamed El-Far, Hugues Charest and 1 more

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PubMed Full text at PMC Publisher
In one paragraph

Article in AIDS research and human retroviruses, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 92% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Alexis KafandoDépartement de Microbiologie, Infectiologie et Immunologie, Faculté de Médecine, Université de Montréal, Montréal, Canada.
Bouchra SerhirLaboratoire de Santé Publique du Québec, Institut National de Santé publique du Québec, Sainte-Anne-de-Bellevue, Canada.
Florence Doualla-BellLaboratoire de Santé Publique du Québec, Institut National de Santé publique du Québec, Sainte-Anne-de-Bellevue, Canada.
Eric FournierLaboratoire de Santé Publique du Québec, Institut National de Santé publique du Québec, Sainte-Anne-de-Bellevue, Canada.
Mohamed Ndongo SangaréDépartement de Médecine Sociale et Préventive, École de Santé Publique, Université de Montréal, Montréal, Canada.
Christine MartineauLaboratoire de Santé Publique du Québec, Institut National de Santé publique du Québec, Sainte-Anne-de-Bellevue, Canada.
Mohamed SyllaCentre de Recherche du Centre Hospitalier de l'Université de Montréal (CRCHUM), Montréal, Canada.
Annie ChamberlandCentre de Recherche du Centre Hospitalier de l'Université de Montréal (CRCHUM), Montréal, Canada.
Mohamed El-FarCentre de Recherche du Centre Hospitalier de l'Université de Montréal (CRCHUM), Montréal, Canada.
Hugues CharestDépartement de Microbiologie, Infectiologie et Immunologie, Faculté de Médecine, Université de Montréal, Montréal, Canada.
Cécile L TremblayDépartement de Microbiologie, Infectiologie et Immunologie, Faculté de Médecine, Université de Montréal, Montréal, Canada.
Centre Hospitalier de l’Université de Montréal · CAUniversité de Montréal · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The identification of transmission clusters (TCs) of HIV-1 using phylogenetic analyses can provide insights into viral transmission network and help improve prevention strategies. We compared the use of partial HIV-1 envelope fragment of 1,070 bp with its loop 3 (108 bp) to determine its utility in inferring HIV-1 transmission clustering. Serum samples of recently (

Indexed as

Cluster AnalysisGenes, envPhylogenyAcute DiseaseAdolescentAdultAmino Acid SequenceChronic DiseaseConsensus SequenceFemaleGenetic VariationHIV-1HIV Core Protein p24HIV Envelope Protein gp120HIV InfectionsHumansHIV Core Protein p24HIV Envelope Protein gp120HIV envelope protein gp120 (305-321)Peptide Fragmentsclustersenvelope gene sequencesHIV-1 transmission networkspairwise genetic distance

Identifiers

PMID31407606
PMCPMC6806616
OpenAlexW2968763408

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.