Evidence map›Paper›PMID 31407474›Full record

ArticleAging cell2019

Mitochondrial DNA somatic mutation burden and heteroplasmy are associated with chronological age, smoking, and HIV infection.

Adam S Ziada, Meng Ying Lu, Jarek Ignas-Menzies, Elijah Paintsil, Min Li, Onyema Ogbuagu, Sara Saberi, Anthony Y Y Hsieh, Beheroze Sattha, P Richard Harrigan and 3 more

Open access · goldAbstract read
In one paragraph

Article in Aging cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 45 citations in OpenAlex.

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  11. Extracellular Delivery of Functional Mitochondria Rescues the Dysfunction of CD4Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

Adam S ZiadaDepartment of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC, Canada.
Meng Ying LuDepartment of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC, Canada.
Jarek Ignas-MenziesDepartment of Mechanical Engineering, University of British Columbia, Vancouver, BC, Canada.
Elijah PaintsilDepartment of Pediatrics, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-8283-4564
Min LiDepartment of Pediatrics, Yale School of Medicine, New Haven, CT, USA.
Onyema OgbuaguDepartment of Medicine, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0001-7342-2608
Sara SaberiDepartment of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC, Canada.
Anthony Y Y HsiehDepartment of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC, Canada.
Beheroze SatthaDepartment of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC, Canada.
P Richard HarriganDepartment of Medicine, University of British Columbia, Vancouver, BC, Canada.ORCID 0000-0003-2631-3390
Steve KallogerDepartment of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC, Canada.ORCID 0000-0003-1332-7881
Hélène C F CôtéDepartment of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC, Canada.ORCID 0000-0002-0399-5141
CIHR team grant on cellular aging, HIV comorbidities in women, children (CARMA)
University of British Columbia · CAYale University · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
HIV Nucleoside Analogs Translational Studies: Resistance and MetabolismK08AI074404 · NIAID · YALE UNIVERSITY · PI PAINTSIL, ELIJAH · 2008 to 2012
$629k
NCATS NIH HHS UL1 TR001863NIAID NIH HHS K08 AI074404
6 · The paper itself

Abstract

The gradual accumulation of mitochondrial DNA (mtDNA) mutations is implicated in aging and may contribute to the accelerated aging phenotype seen with tobacco smoking and HIV infection. mtDNA mutations are thought to arise from oxidative damage; however, recent reports implicate polymerase γ errors during mtDNA replication. Investigations of somatic mtDNA mutations have been hampered by technical challenges in measuring low-frequency mutations. We use primer ID-based next-generation sequencing to quantify both somatic and heteroplasmic blood mtDNA point mutations within the D-loop, in 164 women and girls aged 2-72 years, of whom 35% were smokers and 56% were HIV-positive. Somatic mutations and the occurrence of heteroplasmic mutations increased with age. While transitions are theorized to result from polymerase γ errors, transversions are believed to arise from DNA oxidative damage. In our study, both transition and transversion mutations were associated with age. However, transition somatic mutations were more prevalent than transversions, and no heteroplasmic transversions were observed. We also measured elevated somatic mutations, but not heteroplasmy, in association with high peak HIV viremia. Conversely, heteroplasmy was higher among smokers, but somatic mutations were not, suggesting that smoking promotes the expansion of preexisting mutations rather than de novo mutations. Taken together, our results are consistent with blood mtDNA mutations increasing with age, inferring a greater contribution of polymerase γ errors in mtDNA mutagenesis. We further suggest that smoking and HIV infection both contribute to the accumulation of mtDNA mutations, though in different ways.

Indexed as

MutationAdolescentAdultAgingChildChild, PreschoolDNA, MitochondrialFemaleHigh-Throughput Nucleotide SequencingHIV InfectionsHumansInfantMaleMiddle AgedSmokingYoung AdultDNA, MitochondrialagingheteroplasmyHIVmitochondriamtDNAsmokingsomatic mutations

Identifiers

PMID31407474
PMCPMC6826146
OpenAlexW2967019813

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.