Evidence map›Paper›PMID 31407403›Full record

ArticleGenes, chromosomes & cancer2020

Insertional oncogenesis by HPV70 revealed by multiple genomic analyses in a clinically HPV-negative cervical cancer.

Anne Van Arsdale, Nicole E Patterson, Elaine C Maggi, Lorenzo Agoni, Koenraad Van Doorslaer, Bryan Harmon, Nicole Nevadunsky, Dennis Y S Kuo, Mark H Einstein, Jack Lenz and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Genes, chromosomes & cancer, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Anne Van ArsdaleDepartment of Obstetrics & Gynecology and Women's Health, Albert Einstein College of Medicine, Yeshiva University, Bronx, New York.ORCID 0000-0002-5788-7410
Nicole E PattersonDepartment of Genetics, Albert Einstein College of Medicine, Yeshiva University, Bronx, New York.
Elaine C MaggiDepartment of Genetics, Albert Einstein College of Medicine, Yeshiva University, Bronx, New York.
Lorenzo AgoniDepartment of Women's and Children's Health, Obstetrics & Gynecology Unit, Fondazione Poliambulanza Istituto Ospedaliero, Brescia, Italy.
Koenraad Van DoorslaerSchool of Animal and Comparative Biomedical Sciences, College of Agriculture and Life Sciences BIO5 Institute University of Arizona, Tuscon, Arizona, USA.
Bryan HarmonDepartment of Pathology, Albert Einstein College of Medicine, Yeshiva University, Bronx, New York.
Nicole NevadunskyDepartment of Obstetrics & Gynecology and Women's Health, Albert Einstein College of Medicine, Yeshiva University, Bronx, New York.
Dennis Y S KuoDepartment of Obstetrics & Gynecology and Women's Health, Albert Einstein College of Medicine, Yeshiva University, Bronx, New York.
Mark H EinsteinDepartment of Obstetrics, Gynecology, and Women's Health, Rutgers New Jersey Medical School, Newark, New Jersey.
Jack LenzDepartment of Genetics, Albert Einstein College of Medicine, Yeshiva University, Bronx, New York.
Cristina MontagnaDepartment of Genetics, Albert Einstein College of Medicine, Yeshiva University, Bronx, New York.
Albert Einstein College of Medicine · USFondazione Poliambulanza Istituto Ospedaliero · ITRutgers, The State University of New Jersey · USUniversity of Arizona · US

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
IMAT-ITCR Collaboration: Development of a high-resolution mapping platform for HPV DNA integration in premalignant lesionsR21CA240580 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI LENZ, JACK R., MONTAGNA, CRISTINA · 2019 to 2021
$833k
NCI NIH HHS P30 CA013330NCI NIH HHS R21 CA240580
6 · The paper itself

Abstract

Cervical carcinogenesis, the second leading cause of cancer death in women worldwide, is caused by multiple types of human papillomaviruses (HPVs). To investigate a possible role for HPV in a cervical carcinoma that was HPV-negative by PCR testing, we performed HPV DNA hybridization capture plus massively parallel sequencing. This detected a subgenomic, URR-E6-E7-E1 segment of HPV70 DNA, a type not generally associated with cervical cancer, inserted in an intron of the B-cell lymphoma/leukemia 11B (BCL11B) gene in the human genome. Long range DNA sequencing confirmed the virus and flanking BCL11B DNA structures including both insertion junctions. Global transcriptomic analysis detected multiple, alternatively spliced, HPV70-BCL11B, fusion transcripts with fused open reading frames. The insertion and fusion transcripts were present in an intraepithelial precursor phase of tumorigenesis. These results suggest oncogenicity of HPV70, identify novel BCL11B variants with potential oncogenic implications, and underscore the advantages of thorough genomic analyses to elucidate insights into HPV-associated tumorigenesis.

Indexed as

Base SequenceCarcinogenesisDNA, ViralFemaleGenomicsHigh-Throughput Nucleotide SequencingHumansMiddle AgedPapillomaviridaePapillomavirus InfectionsPolymerase Chain ReactionRepressor ProteinsRNA, MessengerTumor Suppressor ProteinsUterine Cervical NeoplasmsBCL11B protein, humanDNA, ViralRepressor ProteinsRNA, MessengerTumor Suppressor ProteinsBCL11Bcancercervical carcinomafluorescent in situ hybridizationHPV70HPV DNAhybridization captureinsertional oncogenesislong range sequencingoncogene

Identifiers

PMID31407403
PMCPMC6916423
OpenAlexW2967919010

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.