Evidence map›Paper›PMID 31406991›Full record

ArticleGenome biology and evolution2019

Unique DNA Methylation Profiles Are Associated with cis-Variation in Honey Bees.

Boris Yagound, Nicholas M A Smith, Gabriele Buchmann, Benjamin P Oldroyd, Emily J Remnant

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Epigenetic Mechanisms inCurrent issues in molecular biology · 2025
    Review
  3. Climate change-induced stress in the honey beeFrontiers in physiology · 2025
    Review
  4. Article
  5. H3K4me1 Modification Functions in Caste Differentiation in Honey Bees.International journal of molecular sciences · 2023
    Article
  6. Article
  7. Article
  8. Still no evidence for transgenerational inheritance or absence of epigenetic reprogramming in the honey bee.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. Reply to Soley: DNA methylation marks are stably transferred across generations in honey bees.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Parent-of-origin effects, allele-specific expression, genomic imprinting and paternal manipulation in social insects.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  11. Review
  12. Intergenerational transfer of DNA methylation marks in the honey bee.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. Epigenetic Molecular Mechanisms in Insects.Neotropical entomology · 2020
    Review
  14. Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Boris YagoundBehaviour and Genetics of Social Insects Laboratory, School of Life and Environmental Sciences, University of Sydney, Australia.
Nicholas M A SmithBehaviour and Genetics of Social Insects Laboratory, School of Life and Environmental Sciences, University of Sydney, Australia.
Gabriele BuchmannBehaviour and Genetics of Social Insects Laboratory, School of Life and Environmental Sciences, University of Sydney, Australia.
Benjamin P OldroydBehaviour and Genetics of Social Insects Laboratory, School of Life and Environmental Sciences, University of Sydney, Australia.
Emily J RemnantBehaviour and Genetics of Social Insects Laboratory, School of Life and Environmental Sciences, University of Sydney, Australia.
The University of Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA methylation is an important epigenetic modification that mediates diverse processes such as cellular differentiation, phenotypic plasticity, and genomic imprinting. Mounting evidence suggests that local DNA sequence variation can be associated with particular DNA methylation states, indicating that the interplay between genetic and epigenetic factors may contribute synergistically to the phenotypic complexity of organisms. Social insects such as ants, bees, and wasps have extensive phenotypic plasticity manifested in their different castes, and this plasticity has been associated with variation in DNA methylation. Yet, the influence of genetic variation on DNA methylation state remains mostly unknown. Here we examine the importance of sequence-specific methylation at the genome-wide level, using whole-genome bisulfite sequencing of the semen of individual honey bee males. We find that individual males harbor unique DNA methylation patterns in their semen, and that genes that are more variable at the epigenetic level are also more likely to be variable at the genetic level. DNA sequence variation can affect DNA methylation by modifying CG sites directly, but can also be associated with local variation in cis that is not CG-site specific. We show that covariation in sequence polymorphism and DNA methylation state contributes to the individual-specificity of epigenetic marks in social insects, which likely promotes their retention across generations, and their capacity to influence evolutionary adaptation.

Indexed as

DNA MethylationAnimalsBeesEpigenomeFemaleGene Expression RegulationMalePolymorphism, Single NucleotideSemenSulfitesWhole Genome Sequencinghydrogen sulfiteSulfitesallele-specific methylationApis melliferaDNA methylationepigeneticsphenotypic plasticity

Identifiers

PMID31406991
PMCPMC6740151
OpenAlexW2968964082

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.