Concordant expression pattern across multiple immune tissues of commercial broilers in response to avian pathogenic

In this study, RNA-seq gene expression data were obtained for three different immune tissues (bone marrow, thymus, and bursa) at two time points from birds with three phenotypes (non-infected, resistant, and susceptible birds). A total of 380 significant differentially expressed genes (DEGs) were commonly expressed in each of the three tissues in the contrast of susceptible vs. non-infected birds at 5 days post-infection (dpi) and 106 significant DEGs were shared in susceptible vs. resistant birds at 5 dpi. For the co-expressed DEGs, a relatively high consistency in expression pattern was identified in the three tissues for the two contrasts. These co-expressed DEGs were involved in the biological process of response to stimulus, regulation of cell proliferation, signal transduction, and immune system. Moreover, three gene networks were identified for the co-expressed DEGs, showing the activation of the humoral immune response, cell survival, growth and death were the concordant response for the three lymphocyte tissues. Several potential biomarker genes,