Evidence map›Paper›PMID 31406020›Full record

ArticleThe Journal of biological chemistry2019

A ubiquitin-like domain controls protein kinase D dimerization and activation by trans-autophosphorylation.

Daniel J Elsner, Katharina M Siess, Thomas Gossenreiter, Markus Hartl, Thomas A Leonard

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

  1. Delay-facilitated self-assembly in compartmentalized systems.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. Natural variation in protein kinase D modifies alcohol sensitivity inbioRxiv : the preprint server for biology · 2024
    Article
  6. Article
  7. Article
  8. PKD autoinhibition inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Daniel J ElsnerDepartment of Structural and Computational Biology, Max Perutz Labs, Campus Vienna Biocenter 5, 1030 Vienna, Austria.
Katharina M SiessDepartment of Structural and Computational Biology, Max Perutz Labs, Campus Vienna Biocenter 5, 1030 Vienna, Austria.
Thomas GossenreiterMass Spectrometry Facility, Max Perutz Labs, Dr. Bohr-Gasse 3, 1030 Vienna, Austria.ORCID 0000-0002-2935-4078
Markus HartlMass Spectrometry Facility, Max Perutz Labs, Dr. Bohr-Gasse 3, 1030 Vienna, Austria.ORCID 0000-0002-4970-7336
Thomas A LeonardDepartment of Structural and Computational Biology, Max Perutz Labs, Campus Vienna Biocenter 5, 1030 Vienna, Austria thomas.leonard@meduniwien.ac.at.ORCID 0000-0001-6853-666X
Max Perutz Labs · ATUniversity of Vienna · AT

Funding

Austrian Science Fund FWF P 28135Austrian Science Fund FWF P 30584
6 · The paper itself

Abstract

Protein kinase D (PKD) is an essential Ser/Thr kinase in animals and controls a variety of diverse cellular functions, including vesicle trafficking and mitogenesis. PKD is activated by recruitment to membranes containing the lipid second messenger diacylglycerol (DAG) and subsequent phosphorylation of its activation loop. Here, we report the crystal structure of the PKD N terminus at 2.2 Å resolution containing a previously unannotated ubiquitin-like domain (ULD), which serves as a dimerization domain. A single point mutation in the dimerization interface of the ULD not only abrogated dimerization in cells but also prevented PKD activation loop phosphorylation upon DAG production. We further show that the kinase domain of PKD dimerizes in a concentration-dependent manner and autophosphorylates on a single residue in its activation loop. We also provide evidence that PKD is expressed at concentrations 2 orders of magnitude below the ULD dissociation constant in mammalian cells. We therefore propose a new model for PKD activation in which the production of DAG leads to the local accumulation of PKD at the membrane, which drives ULD-mediated dimerization and subsequent trans-autophosphorylation of the kinase domain.

Indexed as

Protein Multimerization3T3 CellsAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsChlorocebus aethiopsCOS CellsDiglyceridesHEK293 CellsHumansMiceMolecular Docking SimulationPhosphorylationPoint MutationProtein DomainsProtein Kinase CCaenorhabditis elegans ProteinsDiglyceridesProtein Kinase Cprotein kinase Dautophosphorylationcrystal structurediacylglyceroldimerizationprotein kinase D (PKD)second messengersignal transductionstructural biologyubiquitin-like domain

Identifiers

PMID31406020
PMCPMC6768651
OpenAlexW2967329846

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.