Evidence map›Paper›PMID 31405913›Full record

ArticleJournal of bacteriology2019

Distinct Modified Nucleosides in tRNA

Akira Hirata, Takeo Suzuki, Tomoko Nagano, Daishiro Fujii, Mizuki Okamoto, Manaka Sora, Todd M Lowe, Tamotsu Kanai, Haruyuki Atomi, Tsutomu Suzuki and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Review
  3. Optimized tRNA structure-seq reveals robust tRNA secondary structures inbioRxiv : the preprint server for biology · 2026
    Article
  4. Review
  5. The Landscape of tRNA Modifications in Archaea.bioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Article
  8. tRNA pseudouridine synthase D (TruD) fromRNA (New York, N.Y.) · 2025
    Article
  9. Article
  10. A novelProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. The extensive mNature communications · 2024
    Article
  12. Article
  13. Article
  14. Identification of URNA (New York, N.Y.) · 2023
    Article
  15. Review
  16. Epitranscriptome: Review of Top 25 Most-Studied RNA Modifications.International journal of molecular sciences · 2022
    Review
  17. Required Elements in tRNA for Methylation by the Eukaryotic tRNA (Guanine-International journal of molecular sciences · 2022
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Akira HirataDepartment of Materials Science and Biotechnology, Graduate School of Science and Engineering, Ehime University, Matsuyama, Japan.
Takeo SuzukiDepartment of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, Tokyo, Japan t_suzuki@chembio.t.u-tokyo.ac.jp hori.hiroyuki.my@ehime-u.ac.jp.
Tomoko NaganoDepartment of Materials Science and Biotechnology, Graduate School of Science and Engineering, Ehime University, Matsuyama, Japan.
Daishiro FujiiDepartment of Materials Science and Biotechnology, Graduate School of Science and Engineering, Ehime University, Matsuyama, Japan.
Mizuki OkamotoDepartment of Materials Science and Biotechnology, Graduate School of Science and Engineering, Ehime University, Matsuyama, Japan.
Manaka SoraDepartment of Materials Science and Biotechnology, Graduate School of Science and Engineering, Ehime University, Matsuyama, Japan.
Todd M LoweDepartment of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, California, USA.
Tamotsu KanaiDepartment of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Kyoto, Japan.
Haruyuki AtomiDepartment of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Kyoto, Japan.
Tsutomu SuzukiDepartment of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, Tokyo, Japan.
Hiroyuki HoriDepartment of Materials Science and Biotechnology, Graduate School of Science and Engineering, Ehime University, Matsuyama, Japan t_suzuki@chembio.t.u-tokyo.ac.jp hori.hiroyuki.my@ehime-u.ac.jp.
Ehime University · JPKyoto University · JPThe University of Tokyo · JPUniversity of California, Santa Cruz · US

Funding

A Unified Atlas of Dynamic tRNA FunctionR01HG006753 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI LOWE, TODD MICHAEL · 2012 to 2022
$4.6M
NHGRI NIH HHS R01 HG006753
6 · The paper itself

Abstract

tRNA m

Indexed as

Archaeal ProteinsGuanosineHumansMethyltransferasesRNA, Transfer, TrpTemperatureThermococcusUridine1-methylguanosine2'-O-methylguanosine2'-O-methyluridine7-methylguanosineArchaeal ProteinsGuanosineMethyltransferasesRNA, Transfer, TrpUridinearchaeagene disruptionmass spectrometrytRNA methyltransferasetRNA modification

Identifiers

PMID31405913
PMCPMC6779453
OpenAlexW2968889507

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.