Evidence map›Paper›PMID 31405219›Full record

ArticleInternational journal of molecular sciences2019

PTO-QuickStep: A Fast and Efficient Method for Cloning Random Mutagenesis Libraries.

Pawel Jajesniak, Kang Lan Tee, Tuck Seng Wong

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 11 citations in OpenAlex.

  1. Rapid Cloning of Random Mutagenesis Libraries Using PTO-QuickStep.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Pawel JajesniakDepartment of Chemical & Biological Engineering and Advanced Biomanufacturing Centre, University of Sheffield, Sir Robert Hadfield Building, Mappin Street, Sheffield S1 3JD, UK.
Kang Lan TeeDepartment of Chemical & Biological Engineering and Advanced Biomanufacturing Centre, University of Sheffield, Sir Robert Hadfield Building, Mappin Street, Sheffield S1 3JD, UK. k.tee@sheffield.ac.uk.
Tuck Seng WongDepartment of Chemical & Biological Engineering and Advanced Biomanufacturing Centre, University of Sheffield, Sir Robert Hadfield Building, Mappin Street, Sheffield S1 3JD, UK. t.wong@sheffield.ac.uk.ORCID 0000-0001-7689-9057
University of Sheffield · GB

Funding

Biotechnology and Biological Sciences Research Council BB/R020183/1Engineering and Physical Sciences Research Council EP/E036252/1Leverhulme Trust LTSRF1819\15\21University of Sheffield GCRF FellowshipUniversity of Sheffield PhD scholarship
6 · The paper itself

Abstract

QuickStep is a cloning method that allows seamless point integration of a DNA sequence at any position within a target plasmid using only Q5 High-Fidelity DNA Polymerase and DpnI endonuclease. This efficient and cost-effective method consists of two steps: two parallel asymmetric PCRs, followed by a megaprimer-based whole-plasmid amplification. To further simplify the workflow, enhance the efficiency, and increase the uptake of QuickStep, we replaced the asymmetric PCRs with a conventional PCR that uses phosphorothioate (PTO) oligos to generate megaprimers with 3' overhangs. The ease and speed of PTO-QuickStep were demonstrated through (1) right-first-time cloning of a 1.8 kb gene fragment into a pET vector and (2) creating a random mutagenesis library for directed evolution. Unlike most ligation-free random mutagenesis library creation methods (e.g., megaprimer PCR of whole plasmid [MEGAWHOP]), PTO-QuickStep does not require the gene of interest to be precloned into an expression vector to prepare a random mutagenesis library. Therefore, PTO-QuickStep is a simple, reliable, and robust technique, adding to the ever-expanding molecular toolbox of synthetic biology and expediting protein engineering via directed evolution.

Indexed as

MutagenesisCloning, MolecularDeoxyribonucleases, Type II Site-SpecificDirected Molecular EvolutionDNADNA-Directed DNA PolymeraseEscherichia coliGene LibraryPlasmidsPolymerase Chain ReactionProtein EngineeringDeoxyribonucleases, Type II Site-SpecificDNADNA-Directed DNA Polymeraseendodeoxyribonuclease DpnIcloningdirected evolutionprotein engineeringPTO-QuickStepQuickSteprandom mutagenesissynthetic biology

Identifiers

PMID31405219
PMCPMC6720219
OpenAlexW2967607456

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.