Evidence map›Paper›PMID 31404082›Full record

ArticlePloS one2019

DNA copy number variations in children with vesicoureteral reflux and urinary tract infections.

Dong Liang, Kirk M McHugh, Pat D Brophy, Nader Shaikh, J Robert Manak, Peter Andrews, Inessa Hakker, Zihua Wang, Andrew L Schwaderer, David S Hains

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Innate immunity · 2020
    Trial
  2. Article
  3. Article
  4. Article
  5. Primary vesicoureteral reflux.Nature reviews. Disease primers · 2024
    Review
  6. Life science alliance · 2024
    Article
  7. Intercalated cell function, kidney innate immunity, and urinary tract infections.Pflugers Archiv : European journal of physiology · 2024
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 1 country.

Dong LiangDepartment of Pediatrics, Indiana University, Indianapolis, IN, United States of America.
Kirk M McHughDivision of Anatomy, The Ohio State University, Columbus, OH, United States of America.
Pat D BrophyDepartment of Pediatrics, University of Rochester Medical Center, Rochester, NY, United States of America.
Nader ShaikhDepartment of Pediatrics, University of Pittsburgh, Pittsburgh, PA, United States of America.
J Robert ManakDepartments of Biology and Pediatrics, University of Iowa, Iowa City, IA, United States of America.
Peter AndrewsCold Spring Harbor Laboratory, Cold Spring Harbor, NY, United States of America.
Inessa HakkerCold Spring Harbor Laboratory, Cold Spring Harbor, NY, United States of America.
Zihua WangCold Spring Harbor Laboratory, Cold Spring Harbor, NY, United States of America.
Andrew L SchwadererDepartment of Pediatrics, Indiana University, Indianapolis, IN, United States of America.
David S HainsDepartment of Pediatrics, Indiana University, Indianapolis, IN, United States of America.ORCID 0000-0003-2494-1537
Cold Spring Harbor Laboratory · USIndiana University Health · USIndiana University School of MedicineThe Ohio State University · USUniversity of Iowa · USUniversity of Pittsburgh · USUniversity of Rochester Medical Center · US

Funding

The interface between critical acid-base mediators and the renal bacterial defenseR01DK106286 · NIDDK · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI HAINS, DAVID SULLIVAN, SCHWADERER, ANDREW LAWRENCE · 2015 to 2018
$1.6M
Genetic Variations and Development of Vesicoureteral Reflux and SequelaeRC4DK090937 · NIDDK · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI HAINS, DAVID SULLIVAN, SCHWADERER, ANDREW LAWRENCE · 2010 to 2010
$1.5M
NIDDK NIH HHS R01 DK106286NIDDK NIH HHS RC4 DK090937
6 · The paper itself

Abstract

Vesicoureteral reflux (VUR) is a complex, heritable disorder. Genome-wide linkage analyses of families affected by VUR have revealed multiple genomic loci linked to VUR. These loci normally harbor a number of genes whose biologically functional variant is yet to be identified. DNA copy number variations (CNVs) have not been extensively studied at high resolution in VUR patients. In this study, we performed array comparative genomic hybridization (aCGH) on a cohort of patients with a history of both VUR and urinary tract infection (UTI) with the objective of identifying genetic variations responsible for VUR and/or UTI susceptibility. UTI/VUR-associated CNVs were identified by aCGH results from the 192 Randomized Intervention for Children With Vesicoureteral Reflux (RIVUR) patients compared to 683 controls. Rare, large CNVs that are likely pathogenic and lead to VUR development were identified using stringent analysis criteria. Because UTI is a common affliction with multiple risk factors, we utilized standard analysis to identify potential disease-modifying CNVs that can contribute to UTI risk. Gene ontology analysis identified that CNVs in innate immunity and development genes were enriched in RIVUR patients. CNVs affecting innate immune genes may contribute to UTI susceptibility in VUR patients and may provide the first step in assisting clinical medicine in determining adverse outcome risk in children with VUR.

Indexed as

Case-Control StudiesChildDNA Copy Number VariationsFemaleGenetic LinkageGenetic Predisposition to DiseaseHumansImmunity, InnateMaleRisk FactorsUrinary Tract InfectionsVesico-Ureteral Reflux

Identifiers

PMID31404082
PMCPMC6690579
OpenAlexW2966888192

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.