Evidence map›Paper›PMID 31403729›Full record

ArticleMolecular microbiology2019

Carbohydrate and PepO control bimodality in competence development by Streptococcus mutans.

Simon A M Underhill, Robert C Shields, Robert A Burne, Stephen J Hagen

Abstract read
In one paragraph

Article in Molecular microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
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  7. Article
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  10. Article
  11. Article
  12. A Novel Competence Pathway in the Oral PathogenJournal of dental research · 2021
    Article
  13. Article
  14. Article
  15. Virulence · 2020
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Simon A M UnderhillDepartment of Physics, University of Florida, 2001 Museum Road, Gainesville, FL, 32611, USA.
Robert C ShieldsDepartment of Oral Biology, University of Florida, 1395 Center Drive, Gainesville, FL, 32610, USA.
Robert A BurneDepartment of Oral Biology, University of Florida, 1395 Center Drive, Gainesville, FL, 32610, USA.ORCID 0000-0002-4234-0316
Stephen J HagenDepartment of Physics, University of Florida, 2001 Museum Road, Gainesville, FL, 32611, USA.ORCID 0000-0002-3373-5033

Funding

GENE REGULATION AND PHYSIOLOGY OF STREPTOCOCCUS MUTANSR01DE012236 · NIDCR · UNIVERSITY OF ROCHESTER · PI Lin Zeng · 1997 to 2026
$8.5M
GENETICS AND PHYSIOLOGY OF ORAL BIOFILMSR01DE013239 · NIDCR · UNIVERSITY OF ROCHESTER · PI BURNE, ROBERT A · 1999 to 2019
$6.6M
Environmental regulation of gene expression dissected by microfluidicsR01DE023339 · NIDCR · UNIVERSITY OF FLORIDA · PI BURNE, ROBERT A, HAGEN, STEPHEN JAMES · 2014 to 2018
$1.9M
NIDCR NIH HHS R01 DE012236NIDCR NIH HHS R01 DE013239NIDCR NIH HHS R01 DE023339
6 · The paper itself

Abstract

In Streptococcus mutans, the alternative sigma factor ComX controls entry into genetic competence. Competence stimulating peptide (CSP) induces bimodal expression of comX, with only a fraction of the population becoming transformable. Curiously, the bimodality of comX is affected by peptides in the growth medium and by carbohydrate source. CSP elicits bimodal expression of comX in media rich in small peptides, but CSP elicits no response in defined media lacking small peptides. In addition, growth on certain sugars increases the proportion of the population that activates comX in response to CSP. By investigating the connection between media and comX bimodality, we find evidence for two mechanisms that modulate transcriptional positive feedback in the ComRS system, where comX bimodality originates. We find that the endopeptidase PepO suppresses the ComRS feedback loop, most likely by degrading the XIP/ComS feedback signal. Deletion of pepO eliminates comX bimodality, leading to a unimodal comX response to CSP in both defined and complex media. We also find that CSP stimulates the ComRS feedback system by upregulating comR in a carbohydrate source-dependent fashion. Our data provide mechanistic insight into how S. mutans regulates bimodality and explain the puzzle of growth medium effects on competence induction by CSP.

Indexed as

Bacterial ProteinsCulture MediaDNA Transformation CompetenceEndopeptidasesGene Expression ProfilingGene Expression Regulation, BacterialQuorum SensingStreptococcus mutansTranscription FactorsTrehaloseBacterial ProteinsComX protein, StreptococcusCulture MediaEndopeptidasesTranscription FactorsTrehalose

Identifiers

PMID31403729
PMCPMC6842401

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.