Evidence map›Paper›PMID 31403346›Full record

ArticleEpigenetics

In-depth characterization of the placental imprintome reveals novel differentially methylated regions across birth weight categories.

Maya A Deyssenroth, Carmen J Marsit, Jia Chen, Luca Lambertini

Open access · bronzeAbstract read
In one paragraph

Article in Epigenetics. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Maya A DeyssenrothDepartment of Environmental Medicine and Public Health, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Carmen J MarsitEnvironmental Health at Rollins School of Public Health, Emory University, Atlanta, GA, USA.ORCID 0000-0003-4566-150X
Jia ChenDepartment of Environmental Medicine and Public Health, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Luca LambertiniDepartment of Environmental Medicine and Public Health, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0003-3326-219X
Icahn School of Medicine at Mount Sinai · USEmory University · US

Funding

True Metal fac coreP30ES009089 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MATTHEW S PERZANOWSKI · 1998 to 2026
$44.7M
Pilot Project ProgramP30ES019776 · NIEHS · EMORY UNIVERSITY · PI Carmen Joseph Marsit · 2013 to 2026
$22.6M
The Mount Sinai Transdisciplinary Center on Early Environmental ExposuresP30ES023515 · NIEHS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Robert O Wright · 2014 to 2026
$21.3M
Environment, Imprinting, and NeurodevelopmentR01ES022223 · NIEHS · EMORY UNIVERSITY · PI CHEN, JIA, MARSIT, CARMEN JOSEPH · 2013 to 2017
$4.3M
Epigenetics in Neurodevelopment and Mental HealthR01MH094609 · NIMH · DARTMOUTH COLLEGE · PI MARSIT, CARMEN JOSEPH · 2011 to 2015
$2.3M
Enriching the Rhode Island Child Health StudyR24ES028507 · NIEHS · EMORY UNIVERSITY · PI Carmen Joseph Marsit, LAURA R STROUD · 2017 to 2026
$2.3M
Intrauterine Metal Exposure, Placental Gene Networks and Fetal GrowthR00ES029571 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI DEYSSENROTH, MAYA ARIANE · 2020 to 2022
$747k
Intrauterine Metal Exposure, Placental Gene Networks and Fetal GrowthK99ES029571 · NIEHS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI DEYSSENROTH, MAYA ARIANE · 2018 to 2019
$199k
NIEHS NIH HHS K99 ES029571NIEHS NIH HHS P30 ES009089NIEHS NIH HHS P30 ES019776NIEHS NIH HHS P30 ES023515NIEHS NIH HHS R00 ES029571NIEHS NIH HHS R01 ES022223NIEHS NIH HHS R24 ES028507NIMH NIH HHS R01 MH094609
6 · The paper itself

Abstract

Imprinted genes play a pivotal role in placental processes underlying fetal development, and much interest centers on discerning whether these loci, via changes in DNA methylation and/or gene expression, inform disruptions in appropriate fetal growth. In this study, we comprehensively profiled DNA methylation across the placental imprintome and assessed the relationship with gene expression levels and aberrant fetal growth.Placental DNA methylation across 153 imprinted loci, including imprint control regions (ICR) and surrounding non-ICR regions, was surveyed using the Nimblegen TruSeq bisulfite sequencing platform among participants enrolled in the Rhode Island Child Health Study (RICHS, n = 163). Methylation and gene expression associations were assessed using eQTM analysis. Differential methylation analysis contrasting small (SGA) and large for gestational age (LGA) infants against appropriate for gestational age (AGA) infants was assessed using the DMRcate R package.We identified 34 SGA-related differentially methylated regions (DMRs) and 9 LGA-related DMRs (FDR<0.05), and these BW-DMRs predominated in promoter and intronic regions. We observed overall hypomethylation among SGA-DMRs overlapping maternally expressed (paternally imprinted) genes while no parent-of-origin effect was observed among LGA DMRs. Three BW-DMRs, mapping to

Indexed as

DNA MethylationGenomic ImprintingAdultBirth WeightEpigenomeFemaleHumansInfant, NewbornPlacentaPregnancyProteinsReceptor, IGF Type 1Receptors, GABA-AGABRG3 protein, humanIGF1R protein, humanmesoderm specific transcript proteinProteinsReceptor, IGF Type 1Receptors, GABA-ABirth WeightimprintingMethylationplacenta

Identifiers

PMID31403346
PMCPMC6961688
OpenAlexW2968289949

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.