Evidence map›Paper›PMID 31403230›Full record

ArticleHuman mutation2019

CAPN5 genetic inactivation phenotype supports therapeutic inhibition trials.

Katherine J Wert, Susanne F Koch, Gabriel Velez, Chun-Wei Hsu, MaryAnn Mahajan, Alexander G Bassuk, Stephen H Tsang, Vinit B Mahajan

Open access · greenAbstract read
In one paragraph

Article in Human mutation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Katherine J WertOmics Laboratory, Byers Eye Institute, Department of Ophthalmology, Stanford University, Palo Alto, California.ORCID 0000-0002-8430-2916
Susanne F KochDepartment of Physiological Genomics, Biomedical Center, Ludwig Maximillian University, Munich, Germany.
Gabriel VelezOmics Laboratory, Byers Eye Institute, Department of Ophthalmology, Stanford University, Palo Alto, California.
Chun-Wei HsuDepartment of Ophthalmology, Edward S. Harkness Eye Institute, New York Presbyterian Hospital, New York, New York.
MaryAnn MahajanOmics Laboratory, Byers Eye Institute, Department of Ophthalmology, Stanford University, Palo Alto, California.
Alexander G BassukDepartment of Pediatrics, University of Iowa, Iowa City, Iowa.
Stephen H TsangDepartment of Ophthalmology, Edward S. Harkness Eye Institute, New York Presbyterian Hospital, New York, New York.
Vinit B MahajanOmics Laboratory, Byers Eye Institute, Department of Ophthalmology, Stanford University, Palo Alto, California.ORCID 0000-0003-1886-1741
NewYork–Presbyterian Hospital · USSmith-Kettlewell Eye Research Institute · USUniversity of Iowa · USLudwig-Maximilians-Universität München · DEVA Palo Alto Health Care System · US

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007337 · NIGMS · UNIVERSITY OF IOWA · PI GEYER, PAMELA K., LENTZ, STEVEN R · 1985 to 2020
$15.9M
Instrumentation, Fabrication, and Design CoreP30EY019007 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Xin Zhang · 2010 to 2026
$12.9M
Stanford Vision Research CoreP30EY026877 · NEI · STANFORD UNIVERSITY · PI Jeffrey L Goldberg · 2017 to 2026
$8.0M
Toward mechanism- and gene-based therapies for retinal degenerationR01EY018213 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Stephen H Tsang · 2008 to 2026
$6.6M
Gene Silencing and Gene Editing in PhototransductionR01EY024698 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Stephen H Tsang · 2015 to 2026
$4.7M
Structure and Function of Calpain-5R01EY024665 · NEI · UNIVERSITY OF IOWA · PI MAHAJAN, VINIT B · 2015 to 2019
$1.9M
Mechanistic Studies on Regenerative Medicine Approaches to Childhood BlindnessR01EY026682 · NEI · UNIVERSITY OF IOWA · PI BASSUK, ALEXANDER G, MAHAJAN, VINIT B · 2016 to 2019
$1.6M
Mechanism-based therapies for photoreceptor degenerationR01EY025225 · NEI · UNIVERSITY OF IOWA · PI MAHAJAN, VINIT B · 2015 to 2018
$1.3M
Molecular Genetics of Dominant Neovascular Inflammatory VitreoretinopathyK08EY020530 · NEI · UNIVERSITY OF IOWA · PI MAHAJAN, VINIT B · 2011 to 2015
$1.1M
Evaluating GWAS AMD Candidate Loci by Gene Editing in Human iPS CellsR21AG050437 · NIA · UNIVERSITY OF IOWA · PI BASSUK, ALEXANDER G, MAHAJAN, VINIT B · 2015 to 2016
$431k
Structure-function studies of Calpain-5 in hereditary uveitisF30EY027986 · NEI · UNIVERSITY OF IOWA · PI VELEZ, GABRIEL · 2018 to 2021
$164k
NCI NIH HHS P30 CA013696NEI NIH HHS 5P30EY019007NEI NIH HHS F30 EY027986NEI NIH HHS F30EYE027986NEI NIH HHS K08 EY020530NEI NIH HHS P30 EY019007NEI NIH HHS P30 EY026877NEI NIH HHS P30EY026877NEI NIH HHS R01 EY018213NEI NIH HHS R01 EY024665NEI NIH HHS R01EY024665NEI NIH HHS R01 EY024698NEI NIH HHS R01EY024698NEI NIH HHS R01 EY025225NEI NIH HHS R01EY025225NEI NIH HHS R01 EY026682NEI NIH HHS R01EY026682NEI NIH HHS R21AG050437NIA NIH HHS R21 AG050437NIGMS NIH HHS T32 GM007337
6 · The paper itself

Abstract

Small molecule pharmacological inhibition of dominant human genetic disease is a feasible treatment that does not rely on the development of individual, patient-specific gene therapy vectors. However, the consequences of protein inhibition as a clinical therapeutic are not well-studied. In advance of human therapeutic trials for CAPN5 vitreoretinopathy, genetic inactivation can be used to infer the effect of protein inhibition in vivo. We created a photoreceptor-specific knockout (KO) mouse for Capn5 and compared the retinal phenotype to both wild-type and an existing Capn5 KO mouse model. In humans, CAPN5 loss-of-function (LOF) gene variants were ascertained in large exome databases from 60,706 unrelated subjects without severe disease phenotypes. Ocular examination of the retina of Capn5 KO mice by histology and electroretinography showed no significant abnormalities. In humans, there were 22 LOF CAPN5 variants located throughout the gene and in all major protein domains. Structural modeling of coding variants showed these LOF variants were nearby known disease-causing variants within the proteolytic core and in regions of high homology between human CAPN5 and 150 homologs, yet the LOF of CAPN5 was tolerated as opposed to gain-of-function disease-causing variants. These results indicate that localized inhibition of CAPN5 is a viable strategy for hyperactivating disease alleles.

Indexed as

MutationAnimalsCalpainChoroid DiseasesDisease Models, AnimalEye Diseases, HereditaryFemaleGene Knockout TechniquesGene SilencingHumansMaleMiceModels, MolecularPhotoreceptor Cells, VertebrateRetinal DegenerationTamoxifenCalpainCapn5 protein, humanCapn5 protein, mouseTamoxifenADNIVcalpain-5gene therapyhuman gene variantsloss-of-functionretina

Identifiers

PMID31403230
PMCPMC7493429
OpenAlexW2967812844

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.