Evidence map›Paper›PMID 31402796›Full record

ArticleEuphytica: Netherlands journal of plant breeding2019

Genome-wide association study to identify genomic regions influencing spontaneous fertility in maize haploids.

Vijay Chaikam, Manje Gowda, Sudha K Nair, Albrecht E Melchinger, Prasanna M Boddupalli

Abstract read
In one paragraph

Article in Euphytica: Netherlands journal of plant breeding, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
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  4. Association mapping of haploid male fertility in sweet corn.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
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  5. Review
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  13. Review
  14. Article
  15. Applications of Doubled Haploids in Plant Breeding and Applied Research.Methods in molecular biology (Clifton, N.J.) · 2021
    Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. QTL mapping of spontaneous haploid genome doubling using genotyping-by-sequencing in maize (Zea mays L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Vijay Chaikam *International Maize and Wheat Improvement Center (CIMMYT), ICRAF Campus, UN Avenue, Gigiri, P.O. Box 1041-00621, Nairobi, Kenya.
Manje Gowda *International Maize and Wheat Improvement Center (CIMMYT), ICRAF Campus, UN Avenue, Gigiri, P.O. Box 1041-00621, Nairobi, Kenya.
Sudha K NairInternational Maize and Wheat Improvement Center (CIMMYT), ICRISAT Campus, Patancheru, Greater Hyderabad, 502324 India.
Albrecht E Melchinger3Institute of Plant Breeding, Seed Science and Population Genetics, University of Hohenheim, 70593 Stuttgart, Germany.
Prasanna M BoddupalliInternational Maize and Wheat Improvement Center (CIMMYT), ICRAF Campus, UN Avenue, Gigiri, P.O. Box 1041-00621, Nairobi, Kenya.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Efficient production and use of doubled haploid lines can greatly accelerate genetic gains in maize breeding programs. One of the critical steps in standard doubled haploid line production is doubling the haploid genome using toxic and costly mitosis-inhibiting chemicals to achieve fertility in haploids. Alternatively, fertility may be spontaneously restored by natural chromosomal doubling, although generally at a rate too low for practical applications in most germplasm. This is the first large-scale genome-wise association study to analyze spontaneous chromosome doubling in haploids derived from tropical maize inbred lines. Induction crosses between tropicalized haploid inducers and 400 inbred lines were made, and the resulting haploid plants were assessed for haploid male fertility which refers to pollen production and haploid fertility which refers to seed production upon self-fertilization. A small number of genotypes were highly fertile and these fertility traits were highly heritable. Agronomic traits like plant height, ear height and tassel branch number were positively correlated with fertility traits. In contrast, haploid induction rate of the source germplasm and plant aspect were not correlated to fertility traits. Several genomic regions and candidate genes were identified that may control spontaneous fertility restoration. Overall, the study revealed the presence of large variation for both haploid male fertility and haploid fertility which can be potentially exploited for improving the efficiency of doubled haploid derivation in tropical maize germplasm.

Indexed as

Doubled haploid (DH)Genome-wide association study (GWAS)Genomic prediction (GP)Haploid female fertility (HFF)Haploid fertility (HF)Haploid male fertility (HMF)

Identifiers

PMID31402796
PMCPMC6647887

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.