Evidence map›Paper›PMID 31402629›Full record

ArticleAnnals of clinical and translational neurology2019

Biallelic CACNA2D2 variants in epileptic encephalopathy and cerebellar atrophy.

Jaya Punetha, Ender Karaca, Alper Gezdirici, Ryan E Lamont, Davut Pehlivan, Dana Marafi, Juan P Appendino, Jill V Hunter, Zeynep C Akdemir, Jawid M Fatih and 5 more

Open access · goldAbstract read
In one paragraph

Article in Annals of clinical and translational neurology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 3 pooled it
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 3 syntheses or guidelines pooled it, 37 citations in OpenAlex.

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  17. The importance of cache domains in αChannels (Austin, Tex.) · 2023
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  18. Pathophysiological Roles of Auxiliary Calcium Channel αHandbook of experimental pharmacology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 3 countries.

Jaya PunethaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.ORCID 0000-0002-6774-4464
Ender KaracaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Alper GezdiriciDepartment of Medical Genetics, Kanuni Sultan Suleyman Training and Research Hospital, Istanbul, Turkey.
Ryan E LamontDepartment of Medical Genetics, Alberta Children's Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada.
Davut PehlivanDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Dana MarafiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.ORCID 0000-0003-2233-3423
Juan P AppendinoClinical Neuroscience, Department of Pediatrics, Alberta Children's Hospital, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada.ORCID 0000-0002-1112-7002
Jill V HunterDepartment of Radiology, Texas Children's Hospital, Houston, Texas.
Zeynep C AkdemirDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Jawid M FatihDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Shalini N JhangianiHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas.
Richard A GibbsDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
A Micheil InnesDepartment of Medical Genetics, Alberta Children's Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada.ORCID 0000-0001-9881-5467
Jennifer E PoseyDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.ORCID 0000-0003-4814-6765
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Baylor College of Medicine · USUniversity of Calgary · CAİstanbul Kanuni Sultan Süleyman Eğitim ve Araştırma Hastanesi · TRTexas Children's Hospital · US

Funding

Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
MEDICAL GENETICS RESEARCH FELLOWSHIP PROGRAMT32GM007526 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI Brendan Lee · 1985 to 2026
$11.4M
STRUCTURAL VARIATION IN NEUROLOGICAL DISEASER35NS105078 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2018 to 2025
$6.0M
Mutidisciplinary Training;Brain Disorders &DevelopmentT32NS043124 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI SWANN, JOHN WILLIAM · 2002 to 2021
$4.6M
Individual genomic analyses to discover the molecular basis and mechanisms contributing to adult-onset diseaseK08HG008986 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI POSEY, JENNIFER ELLEN · 2017 to 2021
$831k
American Brain FoundationMuscular Dystrophy Association #512848NHGRI NIH HHS K08 HG008986NHGRI NIH HHS UM1 HG006542NHLBI NIH HHSNIGMS NIH HHS T32 GM007526NIH HHSNINDS NIH HHS R35 NS105078NINDS NIH HHS T32 NS043124
6 · The paper itself

Abstract

objectiveTo characterize the molecular and clinical phenotypic basis of developmental and epileptic encephalopathies caused by rare biallelic variants in CACNA2D2.

methodsTwo affected individuals from a family with clinical features of early onset epileptic encephalopathy were recruited for exome sequencing at the Centers for Mendelian Genomics to identify their molecular diagnosis. GeneMatcher facilitated identification of a second family with a shared candidate disease gene identified through clinical gene panel-based testing.

resultsRare biallelic CACNA2D2 variants have been previously reported in three families with developmental and epileptic encephalopathy, and one family with congenital ataxia. We identified three individuals in two unrelated families with novel homozygous rare variants in CACNA2D2 with clinical features of developmental and epileptic encephalopathy and cerebellar atrophy. Family 1 includes two affected siblings with a likely damaging homozygous rare missense variant c.1778G>C; p.(Arg593Pro) in CACNA2D2. Family 2 includes a proband with a homozygous rare nonsense variant c.485_486del; p.(Tyr162Ter) in CACNA2D2. We compared clinical and molecular findings from all nine individuals reported to date and note that cerebellar atrophy is shared among all.

interpretationOur study supports the candidacy of CACNA2D2 as a disease gene associated with a phenotypic spectrum of neurological disease that include features of developmental and epileptic encephalopathy, ataxia, and cerebellar atrophy. Age at presentation may affect apparent penetrance of neurogenetic trait manifestations and of a particular clinical neurological endophenotype, for example, seizures or ataxia.

Indexed as

AdultAtrophyCalcium ChannelsCerebellar AtaxiaCerebellar DiseasesEpilepsyFemaleHumansMaleMutation, MissensePedigreeSeizuresSiblingsSpasms, InfantileCACNA2D2 protein, humanCalcium Channels

Identifiers

PMID31402629
PMCPMC6689679
OpenAlexW2956576079

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.