Evidence map›Paper›PMID 31401351›Full record

ArticleiScience2019

Strains of Staphylococcus aureus that Colonize and Infect Skin Harbor Mutations in Metabolic Genes.

Karen P Acker, Tania Wong Fok Lung, Emily West, Joshua Craft, Apurva Narechania, Hannah Smith, Kelsey O'Brien, Ahmed M Moustafa, Christine Lauren, Paul J Planet and 1 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Implant-DerivedAntibiotics (Basel, Switzerland) · 2025
    Article
  3. Article
  4. Role of Trained Immunity in Heath and Disease.Current cardiology reports · 2025
    Review
  5. Phenotypic Variation inAntibiotics (Basel, Switzerland) · 2024
    Review
  6. The Complex Intracellular Lifecycle ofInternational journal of molecular sciences · 2024
    Review
  7. Antibiotics (Basel, Switzerland) · 2023
    Review
  8. Review
  9. Article
  10. The Skin Microbiome: Current Landscape and Future Opportunities.International journal of molecular sciences · 2023
    Review
  11. Article
  12. Review
  13. Review
  14. Review
  15. Frontiers in cellular and infection microbiology · 2022
    Review
  16. Article
  17. International journal of molecular sciences · 2020
    Review
  18. Review
  19. Article
  20. Comparative genomics in infectious disease.Current opinion in microbiology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Karen P AckerDepartment of Pediatrics, College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA.
Tania Wong Fok LungDepartment of Pediatrics, College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA.
Emily WestDepartment of Pediatrics, College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA.
Joshua CraftDepartment of Pediatrics, College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA.
Apurva NarechaniaSackler Institute for Comparative Genomics, American Museum of Natural History, New York, NY, USA.
Hannah SmithDepartment of Pediatrics, College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA.
Kelsey O'BrienChildren's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Ahmed M MoustafaChildren's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Christine LaurenDepartment of Dermatology and Department of Pediatrics, College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA.
Paul J PlanetDepartment of Pediatrics, College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA; Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA; Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, NY, USA; Department of Pediatrics, Perelman College of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Alice PrinceDepartment of Pediatrics, College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA. Electronic address: asp7@cumc.columbia.edu.
Columbia University · USChildren's Hospital of Philadelphia · USAmerican Museum of Natural History · US

Funding

STAPHYLOCOCCUS AUREUS ACTIVATION OF TNF SIGNALING PATHWAYSR01HL079395 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PRINCE, ALICE S · 2006 to 2016
$4.3M
Training in Pediatric Infectious DiseasesT32AI007531 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PRINCE, ALICE S, SAIMAN, LISA · 1998 to 2023
$4.0M
Bacterial Interference to Prevent Staphylococcus aureus InfectionR01AI137526 · NIAID · CHILDREN'S HOSP OF PHILADELPHIA · PI PLANET, PAUL J · 2018 to 2021
$1.7M
MRSA Activation of Human Keratinocyte SignalingR01AI103854 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PRINCE, ALICE S · 2013 to 2016
$1.6M
Becton Dickinson LSR II Analytical Flow CytometerS10RR027050 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CLYNES, RAPHAEL A. · 2011 to 2011
$413k
Role of Staphylococcus aureus SpA in Microbial Competition and Host ColonizationK08AI101005 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PLANET, PAUL J · 2012 to 2014
$405k
NCRR NIH HHS S10 RR027050NHLBI NIH HHS R01 HL079395NIAID NIH HHS K08 AI101005NIAID NIH HHS R01 AI103854NIAID NIH HHS R01 AI137526NIAID NIH HHS T32 AI007531
6 · The paper itself

Abstract

Staphylococcus aureus is the most common cause of skin and soft tissue infections, yet the bacterial genetic changes associated with adaptation to human skin are not well characterized. S. aureus strains isolated from patients with chronic skin colonization and intermittent infection were used to determine the staphylococcal genotypes or phenotypes associated with adaptation to human skin. We demonstrate that polymorphisms in metabolic genes, particularly those involved in the tricarboxylic acid cycle, the fumarate-succinate axis, and the generation of terminal electron transporters, are unexpectedly common. These skin-adapted strains activated glycolysis and hypoxia-inducible factor-1α, interleukin (IL)-1β, and IL-18 release from keratinocytes and promoted dermatopathology equivalent to a methicillin-resistant Staphylococcus aureus USA300 control in a murine model of infection. However, in contrast to USA300, a skin-adapted isolate failed to generate protection from a secondary infectious challenge. Within the context of human skin, there appears to be selection for S. aureus metabolic adaptive changes that promote glycolysis and maintain pathogenicity.

Indexed as

BacteriologyMicrobial GeneticsMicrobiome

Identifiers

PMID31401351
PMCPMC6700416
OpenAlexW2966501759

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.