Evidence map›Paper›PMID 31400167›Full record

ArticleMolecular microbiology2019

Acidic pH promotes lipopolysaccharide modification and alters colonization in a bacteria-animal mutualism.

Julia A Schwartzman, Jonathan B Lynch, Stephany Flores Ramos, Lawrence Zhou, Michael A Apicella, Joanne Y Yew, Edward G Ruby

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Article
  3. ISME communications · 2025
    Article
  4. Article
  5. Inter-kingdom communication and the sympoietic way of life.Frontiers in cell and developmental biology · 2024
    Article
  6. Review
  7. Nocturnal Acidification: A Coordinating Cue in theInternational journal of molecular sciences · 2022
    Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Julia A SchwartzmanDepartment of Medical Microbiology and Immunology, University of Wisconsin-Madison, Madison, WI, USA.
Jonathan B LynchPacific Biosciences Research Center, University of Hawaii-Manoa, Honolulu, HI, USA.ORCID 0000-0001-5221-7090
Stephany Flores RamosPacific Biosciences Research Center, University of Hawaii-Manoa, Honolulu, HI, USA.
Lawrence ZhouDepartment of Medical Microbiology and Immunology, University of Wisconsin-Madison, Madison, WI, USA.
Michael A ApicellaDepartment of Microbiology and Immunology, University of Iowa Carver College of Medicine, Iowa City, IA, USA.
Joanne Y YewPacific Biosciences Research Center, University of Hawaii-Manoa, Honolulu, HI, USA.
Edward G RubyDepartment of Medical Microbiology and Immunology, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0002-4112-4830
University of Hawaiʻi at Mānoa · USUniversity of Wisconsin–Madison · USUniversity of Iowa · US

Funding

Vermont INBRE Administrative Supplement 2024 AWD 118P20GM103449 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI CHRISTOPHER S FRANCKLYN · 2012 to 2026
$58.4M
Vector Core-Core 2P30DK054759 · NIDDK · UNIVERSITY OF IOWA · PI Amy Leanne Ryan · 1998 to 2026
$30.5M
WATER DISTRIB:PHYSICAL PROPERT:PIZZA &LMPS MOZZARELLA CHEESES:EARLY STAGE MATURP41RR002301 · NCRR · UNIVERSITY OF WISCONSIN-MADISON · PI MARKLEY, JOHN LUTE · 1985 to 2011
$13.0M
Chemistry-Biology Interface Training ProgramT32GM008505 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BLACKWELL, HELEN E. · 1993 to 2023
$9.8M
Microbial Pathogenesis &Host Responses Training ProgramT32AI055397 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI KLEIN, BRUCE STEVEN · 2003 to 2024
$5.5M
Vibrio fischeri as a Model for Bacterial ColonizationR37AI050661 · NIAID · UNIVERSITY OF HAWAII AT MANOA · PI MARGARET J MC FALL-NGAI, Edward G Ruby · 2018 to 2026
$5.4M
Vibrio fischeri as a model of Bacterial ColonizationR01AI050661 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI MC FALL-NGAI, MARGARET J, RUBY, EDWARD G · 2002 to 2016
$5.0M
Vibrio Virulence Determinants in a Benign ColonizationR01OD011024 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI MC FALL-NGAI, MARGARET J, RUBY, EDWARD G · 2012 to 2020
$3.9M
Vibrio colonization determinants in symbiosisR01GM135254 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI MC FALL-NGAI, MARGARET J, RUBY, EDWARD G · 2020 to 2023
$1.9M
Determination of outer membrane vesicle composition and effector activity in the Vibrio fischeri-Euprymna scolopes symbiosisF32GM119238 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI LYNCH, JONATHAN · 2016 to 2018
$174k
NCRR NIH HHS P41 RR002301NIAID NIH HHS R01 AI050661NIAID NIH HHS R37 AI050661NIAID NIH HHS T32 AI055397NIDDK NIH HHS P30 DK054759NIGMS NIH HHS F32 GM119238NIGMS NIH HHS P20 GM103449NIGMS NIH HHS R01 GM135254NIGMS NIH HHS T32 GM008505NIH HHS R01 OD011024
6 · The paper itself

Abstract

Environmental pH can be an important cue for symbiotic bacteria as they colonize their eukaryotic hosts. Using the model mutualism between the marine bacterium Vibrio fischeri and the Hawaiian bobtail squid, we characterized the bacterial transcriptional response to acidic pH experienced during the shift from planktonic to host-associated lifestyles. We found several genes involved in outer membrane structure were differentially expressed based on pH, indicating alterations in membrane physiology as V. fischeri initiates its symbiotic program. Exposure to host-like pH increased the resistance of V. fischeri to the cationic antimicrobial peptide polymixin B, which resembles antibacterial molecules that are produced by the squid to select V. fischeri from the ocean microbiota. Using a forward genetic screen, we identified a homolog of eptA, a predicted phosphoethanolamine transferase, as critical for antimicrobial defense. We used MALDI-MS to verify eptA as an ethanolamine transferase for the lipid-A portion of V. fischeri lipopolysaccharide. We then used a DNA pulldown approach to discover that eptA transcription is activated by the global regulator H-NS. Finally, we revealed that eptA promotes successful squid colonization by V. fischeri, supporting its potential role in initiation of this highly specific symbiosis.

Indexed as

Aliivibrio fischeriAnimalsDecapodiformesHost Microbial InteractionsHydrogen-Ion ConcentrationLipopolysaccharidesSymbiosisLipopolysaccharides

Identifiers

PMID31400167
PMCPMC6823639
OpenAlexW2969080413

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.