Evidence map›Paper›PMID 31399858›Full record

ArticleJournal of cheminformatics2019

PUG-View: programmatic access to chemical annotations integrated in PubChem.

Sunghwan Kim, Paul A Thiessen, Tiejun Cheng, Jian Zhang, Asta Gindulyte, Evan E Bolton

Abstract read
In one paragraph

Article in Journal of cheminformatics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Glycoscience data content in the NCBI Glycans and PubChem.Analytical and bioanalytical chemistry · 2025
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Chemical Species Ontology for Data Integration and Knowledge Discovery.Journal of chemical information and modeling · 2023
    Article
  9. Article
  10. PubChem 2023 update.Nucleic acids research · 2023
    Article
  11. Article
  12. Article
  13. High-Throughput Screening Assay Profiling for Large Chemical Databases.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. DockCoV2: a drug database against SARS-CoV-2.Nucleic acids research · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sunghwan KimNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Department of Health and Human Services, 8600 Rockville Pike, Bethesda, MD, 20894, USA.ORCID http://orcid.org/0000-0001-9828-2074
Paul A ThiessenNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Department of Health and Human Services, 8600 Rockville Pike, Bethesda, MD, 20894, USA.ORCID http://orcid.org/0000-0002-1992-2086
Tiejun ChengNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Department of Health and Human Services, 8600 Rockville Pike, Bethesda, MD, 20894, USA.ORCID http://orcid.org/0000-0002-4486-3356
Jian ZhangNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Department of Health and Human Services, 8600 Rockville Pike, Bethesda, MD, 20894, USA.ORCID http://orcid.org/0000-0002-6192-4632
Asta GindulyteNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Department of Health and Human Services, 8600 Rockville Pike, Bethesda, MD, 20894, USA.ORCID http://orcid.org/0000-0001-9600-5305
Evan E BoltonNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Department of Health and Human Services, 8600 Rockville Pike, Bethesda, MD, 20894, USA. bolton@ncbi.nlm.nih.gov.ORCID http://orcid.org/0000-0002-5959-6190

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PubChem is a chemical data repository that provides comprehensive information on various chemical entities. It contains a wealth of chemical information from hundreds of data sources. Programmatic access to this large amount of data provides researchers with new opportunities for data-intensive research. PubChem provides several programmatic access routes. One of these is PUG-View, which is a Representational State Transfer (REST)-style web service interface specialized for accessing annotation data contained in PubChem. The present paper describes various aspects of PUG-View, including the scope of data accessible through PUG-View, the syntax for formulating a PUG-View request URL, the difference of PUG-View from other web service interfaces in PubChem, and its limitations and usage policies.

Indexed as

Programmatic accessPubChemPUG-RESTPUG-ViewWeb service

Identifiers

PMID31399858
PMCPMC6688265

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.