Evidence map›Paper›PMID 31398187›Full record

ArticlePLoS genetics2019

Age- and stress-associated C. elegans granulins impair lysosomal function and induce a compensatory HLH-30/TFEB transcriptional response.

Victoria J Butler, Fuying Gao, Christian I Corrales, Wilian A Cortopassi, Benjamin Caballero, Mihir Vohra, Kaveh Ashrafi, Ana Maria Cuervo, Matthew P Jacobson, Giovanni Coppola and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Targeting Progranulin as an Immuno-Neurology Therapeutic Approach.International journal of molecular sciences · 2023
    Review
  10. Review
  11. Article
  12. Frontiers in immunology · 2023
    Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. Frontiers in endocrinology · 2020
    Review
  19. Article
  20. MiT/TFE Family of Transcription Factors: An Evolutionary Perspective.Frontiers in cell and developmental biology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Victoria J ButlerMemory and Aging Center, Department of Neurology, University of California, San Francisco, California, United States of America.ORCID 0000-0002-1693-871X
Fuying GaoSemel Institute for Neuroscience and Human Behavior, Departments of Psychiatry and Biobehavioral Sciences and Neurology, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America.ORCID 0000-0002-5798-7948
Christian I CorralesMemory and Aging Center, Department of Neurology, University of California, San Francisco, California, United States of America.ORCID 0000-0001-6269-9337
Wilian A CortopassiDepartment of Pharmaceutical Chemistry, University of California, San Francisco, California, United States of America.ORCID 0000-0001-8038-7847
Benjamin CaballeroDepartment of Developmental and Molecular Biology, Albert Einstein College of Medicine, New York, New York, United States of America.
Mihir VohraDepartment of Physiology, University of California, San Francisco, California, United States of America.ORCID 0000-0002-0032-5708
Kaveh AshrafiDepartment of Physiology, University of California, San Francisco, California, United States of America.ORCID 0000-0002-5887-0346
Ana Maria CuervoDepartment of Developmental and Molecular Biology, Albert Einstein College of Medicine, New York, New York, United States of America.
Matthew P JacobsonDepartment of Pharmaceutical Chemistry, University of California, San Francisco, California, United States of America.ORCID 0000-0001-6262-655X
Giovanni CoppolaSemel Institute for Neuroscience and Human Behavior, Departments of Psychiatry and Biobehavioral Sciences and Neurology, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America.
Aimee W KaoMemory and Aging Center, Department of Neurology, University of California, San Francisco, California, United States of America.
University of California, San Francisco · USAlbert Einstein College of Medicine · USUniversity of California, Los Angeles · US

Funding

Role of Autophagy in T Cell Function and Immunosenescence (Project 3)P01AG031782 · NIA · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI MACIAN, FERNANDO · 2009 to 2024
$36.2M
Project 3: Autophagy dysfunction and neuronal activity in FTDU54NS100717 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI KROGAN, NEVAN J · 2016 to 2020
$10.8M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Integrative Center for Neurogenetics and Neurogenomics - OverallP30NS062691 · NINDS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI COPPOLA, GIOVANNI · 2009 to 2018
$7.4M
Decreased Protein Degradation in AgingR37AG021904 · NIA · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI CUERVO, ANA MARIA · 2013 to 2022
$4.4M
Linking metabolism, neural function, and agingR01AG046400 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ASHRAFI, KAVEH · 2014 to 2023
$4.3M
Understanding Alzheimer's Disease in the Context of the Aging BrainRF1AG054108 · NIA · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI CUERVO, ANA MARIA · 2016 to 2016
$2.1M
Understanding the molecular functions of progranulin and granulin in FTLDR01NS095257 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KAO, AIMEE · 2015 to 2019
$1.9M
Understanding cleaved granulin production, protease inhibition and effects on protein homeostasisR01AG059052 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KAO, AIMEE · 2018 to 2022
$1.8M
Genetic, Genomic, and Imaging Biomarkers in Degenerative DementiaRC1AG035610 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI COPPOLA, GIOVANNI · 2009 to 2010
$910k
Genetic Approaches to Understanding Granulin FunctionR21NS082709 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KAO, AIMEE · 2013 to 2014
$426k
NIA NIH HHS P01 AG031782NIA NIH HHS R01 AG046400NIA NIH HHS R01 AG059052NIA NIH HHS R37 AG021904NIA NIH HHS RC1 AG035610NIA NIH HHS RF1 AG054108NIH HHS P40 OD010440NINDS NIH HHS P30 NS062691NINDS NIH HHS R01 NS095257NINDS NIH HHS R21 NS082709NINDS NIH HHS U54 NS100717
6 · The paper itself

Abstract

The progressive failure of protein homeostasis is a hallmark of aging and a common feature in neurodegenerative disease. As the enzymes executing the final stages of autophagy, lysosomal proteases are key contributors to the maintenance of protein homeostasis with age. We previously reported that expression of granulin peptides, the cleavage products of the neurodegenerative disease protein progranulin, enhance the accumulation and toxicity of TAR DNA binding protein 43 (TDP-43) in Caenorhabditis elegans (C. elegans). In this study we show that C. elegans granulins are produced in an age- and stress-dependent manner. Granulins localize to the endolysosomal compartment where they impair lysosomal protease expression and activity. Consequently, protein homeostasis is disrupted, promoting the nuclear translocation of the lysosomal transcription factor HLH-30/TFEB, and prompting cells to activate a compensatory transcriptional program. The three C. elegans granulin peptides exhibited distinct but overlapping functional effects in our assays, which may be due to amino acid composition that results in distinct electrostatic and hydrophobicity profiles. Our results support a model in which granulin production modulates a critical transition between the normal, physiological regulation of protease activity and the impairment of lysosomal function that can occur with age and disease.

Indexed as

AgingAnimalsAnimals, Genetically ModifiedBasic Helix-Loop-Helix ProteinsCaenorhabditis elegansCaenorhabditis elegans ProteinsDisease Models, AnimalDNA-Binding ProteinsEndopeptidasesGene Expression RegulationGranulinsHumansLysosomesNeurodegenerative DiseasesStress, PhysiologicalBasic Helix-Loop-Helix ProteinsCaenorhabditis elegans ProteinsDNA-Binding ProteinsEndopeptidasesGranulinsHLH-30 protein, C elegansTARDBP protein, human

Identifiers

PMID31398187
PMCPMC6703691
OpenAlexW2968404232

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.