Evidence map›Paper›PMID 31398006›Full record

ArticleAnalytical chemistry2019

Dual-Functional Titanium(IV) Immobilized Metal Affinity Chromatography Approach for Enabling Large-Scale Profiling of Protein Mannose-6-Phosphate Glycosylation and Revealing Its Predominant Substrates.

Junfeng Huang, Jing Dong, Xudong Shi, Zhengwei Chen, Yusi Cui, Xiaoyan Liu, Mingliang Ye, Lingjun Li

Open access · greenAbstract read
In one paragraph

Article in Analytical chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 46 citations in OpenAlex.

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  10. Boost-DiLeu: Enhanced IsobaricAnalytical chemistry · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Junfeng Huang
Jing DongCAS Key Laboratory of Separation Sciences for Analytical Chemistry, National Chromatographic R&A Center , Dalian Institute of Chemical Physics, Chinese Academy of Sciences , Dalian 116023 , China.
Xudong Shi
Zhengwei Chen
Yusi Cui
Xiaoyan LiuCAS Key Laboratory of Separation Sciences for Analytical Chemistry, National Chromatographic R&A Center , Dalian Institute of Chemical Physics, Chinese Academy of Sciences , Dalian 116023 , China.
Mingliang YeCAS Key Laboratory of Separation Sciences for Analytical Chemistry, National Chromatographic R&A Center , Dalian Institute of Chemical Physics, Chinese Academy of Sciences , Dalian 116023 , China.ORCID 0000-0002-5872-9326
Lingjun LiSchool of Life Sciences , Tianjin University , Tianjin 300072 , China.ORCID 0000-0003-0056-3869
University of Wisconsin–Madison · USDalian Institute of Chemical Physics · CNTianjin University · CN

Funding

Mass Spectrometric Studies of Neuropeptides in FeedingR01DK071801 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI LINGJUN LI · 2006 to 2026
$6.7M
Di-Leu-enabled multiplexed quantitation for biomarker discovery and validation in Alzheimer's diseaseRF1AG052324 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI LI, LINGJUN · 2018 to 2018
$2.4M
Acquisition of a High-Field Dual Source FTICR-MS for Pharmaceutical ResearchS10RR029531 · NCRR · UNIVERSITY OF WISCONSIN-MADISON · PI LI, LINGJUN · 2011 to 2011
$2.1M
MULTIPLEX CHEMICAL TAGS FOR HIGH-THROUGHPUT GLYCAN AND GLYCOPEPTIDE QUANTITATION AND CHARACTERIZATIONU01CA231081 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI LI, LINGJUN · 2018 to 2020
$1.3M
NCI NIH HHS U01 CA231081NCRR NIH HHS S10 RR029531NIA NIH HHS RF1 AG052324NIDDK NIH HHS R01 DK071801
6 · The paper itself

Abstract

Mannose-6-phosphate (M6P) glycosylation is an important post-translational modification (PTM) and plays a crucial role in transferring lysosomal hydrolases to lysosome, and is involved in several other biological processes. Aberrant M6P modifications have been implicated in lysosomal storage diseases and numerous other disorders including Alzheimer's disease and cancer. Research on profiling of intact M6P glycopeptides remains challenging due to its extremely low stoichiometry. Here we propose a dual-mode affinity approach to enrich M6P glycopeptides by dual-functional titanium(IV) immobilized metal affinity chromatography [Ti(IV)-IMAC] materials. In combination with state-of-the-art mass spectrometry and database search engine, we profiled 237 intact M6P glycopeptides corresponding to 81 M6P glycoproteins in five types of tissues in mouse, representing the first large-scale profiling of M6P glycosylation in mouse samples. The analysis of M6P glycoforms revealed the predominant glycan substrates of this PTM. Gene ontology analysis showed that overrepresented M6P glycoproteins were lysosomal-associated proteins. However, there were still substantial M6P glycoproteins that possessed different subcellular locations and molecular functions. Deep mining of their roles implicated in lysosomal and nonlysosomal function can provide new insights into functional roles of this important yet poorly studied modification.

Indexed as

Amino Acid SequenceAnimalsChromatography, AffinityGene OntologyGlycopeptidesGlycoproteinsGlycosylationMannosephosphatesMiceProtein Processing, Post-TranslationalSoftwareTandem Mass SpectrometryTitaniumGlycopeptidesGlycoproteinsmannose-6-phosphateMannosephosphatesTitanium

Identifiers

PMID31398006
PMCPMC7293878
OpenAlexW2968628755

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.