Evidence map›Paper›PMID 31397328›Full record

ArticleActa crystallographica. Section F, Structural biology communications2019

The Rel stringent factor from Thermus thermophilus: crystallization and X-ray analysis.

Katleen Van Nerom, Hedvig Tamman, Hiraku Takada, Vasili Hauryliuk, Abel Garcia-Pino

Open access · greenAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Katleen Van NeromCellular and Molecular Microbiology, Faculté des Sciences, Université Libre de Bruxelles (ULB), 6041 Gosselies, Belgium.
Hedvig TammanCellular and Molecular Microbiology, Faculté des Sciences, Université Libre de Bruxelles (ULB), 6041 Gosselies, Belgium.
Hiraku TakadaDepartment of Molecular Biology, Umeå University, SE-901 87 Umeå, Sweden.
Vasili HauryliukDepartment of Molecular Biology, Umeå University, SE-901 87 Umeå, Sweden.
Abel Garcia-PinoCellular and Molecular Microbiology, Faculté des Sciences, Université Libre de Bruxelles (ULB), 6041 Gosselies, Belgium.
Umeå University · SEUniversité Libre de Bruxelles · BEWalloon Excellence in Lifesciences and Biotechnology · BE

Funding

Fonds De La Recherche Scientifique - FNRS CR/DM-392Fonds De La Recherche Scientifique - FNRS FNRS-EQP U.N043.17F,Fonds De La Recherche Scientifique - FNRS FNRS-PDR T.0066.18Fonds De La Recherche Scientifique - FNRS FRFS-WELBIO CR-2017S-03
6 · The paper itself

Abstract

The stringent response, controlled by (p)ppGpp, enables bacteria to trigger a strong phenotypic resetting that is crucial to cope with adverse environmental changes and is required for stress survival and virulence. In the bacterial cell, (p)ppGpp levels are regulated by the concerted opposing activities of RSH (RelA/SpoT homologue) enzymes that can transfer a pyrophosphate group of ATP to the 3' position of GDP (or GTP) or remove the 3' pyrophosphate moiety from (p)ppGpp. Bifunctional Rel enzymes are notoriously difficult to crystallize owing to poor stability and a propensity for aggregation, usually leading to a loss of biological activity after purification. Here, the production, biochemical analysis and crystallization of the bifunctional catalytic region of the Rel stringent factor from Thermus thermophilus (Rel

Indexed as

Amino Acid SequenceBacterial ProteinsCatalytic DomainCrystallizationCrystallography, X-RayGTP PyrophosphokinaseModels, MolecularProtein ConformationThermus thermophilusBacterial ProteinsGTP Pyrophosphokinasebacterial alarmone(p)ppGppRel/RelA/SpoTstringent responseThermus thermophilus

Identifiers

PMID31397328
PMCPMC6688660
OpenAlexW2965645607

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.