Evidence map›Paper›PMID 31397323›Full record

ArticleActa crystallographica. Section F, Structural biology communications2019

AMi: a GUI-based, open-source system for imaging samples in multi-well plates.

Andrew Bohm

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Introducing Methods Communications, a new category of contributions to Acta Crystallographica F.Acta crystallographica. Section F, Structural biology communications · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Andrew BohmDepartment of Developmental, Molecular, and Chemical Biology, Tufts University, 136 Harrison Avenue, Boston, MA 02111, USA.

Funding

A structure-based approach to accelerated recombinase engineeringR01AI150499 · NIAID · TUFTS UNIVERSITY BOSTON · PI BOHM, ALEX ANDREW · 2020 to 2021
$495k
A structure-based approach to accelerated recombinase engineeringR01GM126149 · NIGMS · TUFTS UNIVERSITY BOSTON · PI BOHM, ALEX ANDREW · 2018 to 2019
$495k
NIAID NIH HHS R01 AI150499NIGMS NIH HHS R01 GM126149
6 · The paper itself

Abstract

Described here are instructions for building and using an inexpensive automated microscope (AMi) that has been specifically designed for viewing and imaging the contents of multi-well plates. The X, Y, Z translation stage is controlled through dedicated software (AMiGUI) that is being made freely available. Movements are controlled by an Arduino-based board running grbl, and the graphical user interface and image acquisition are controlled via a Raspberry Pi microcomputer running Python. Images can be written to the Raspberry Pi or to a remote disk. Plates with multiple sample wells at each row/column position are supported, and a script file for automated z-stack depth-of-field enhancement is written along with the images. The graphical user interface and real-time imaging also make it easy to manually inspect and capture images of individual samples.

Indexed as

Computer GraphicsSoftwareUser-Computer InterfaceHumansImage Processing, Computer-AssistedMicroscopyPattern Recognition, AutomatedAMiAMiGUIautomated microscopycrystallographymulti-well plates

Identifiers

PMID31397323
PMCPMC6688666

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.