Evidence map›Paper›PMID 31396624›Full record

ArticleNucleic acids research2019

Adenovirus major core protein condenses DNA in clusters and bundles, modulating genome release and capsid internal pressure.

Natalia Martín-González, Mercedes Hernando-Pérez, Gabriela N Condezo, Marta Pérez-Illana, Antonio Šiber, David Reguera, Philomena Ostapchuk, Patrick Hearing, Carmen San Martín, Pedro J de Pablo

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Mysteries of adenovirus packaging.Journal of virology · 2025
    Review
  8. Article
  9. Article
  10. Article
  11. Atomic Force Microscopy of Viruses.Sub-cellular biochemistry · 2024
    Review
  12. Mechanical Properties of Viruses.Sub-cellular biochemistry · 2024
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Natalia Martín-GonzálezDepartment of Condensed Matter Physics, Universidad Autónoma de Madrid, Madrid 28049, Spain.
Mercedes Hernando-PérezDepartment of Macromolecular Structures, Centro Nacional de Biotecnología (CNB-CSIC), Madrid 28049, Spain.
Gabriela N CondezoDepartment of Macromolecular Structures, Centro Nacional de Biotecnología (CNB-CSIC), Madrid 28049, Spain.
Marta Pérez-IllanaDepartment of Macromolecular Structures, Centro Nacional de Biotecnología (CNB-CSIC), Madrid 28049, Spain.
Antonio ŠiberInstitute of Physics, Zagreb, Croatia.
David RegueraDepartament de Física de la Matèria Condensada, Facultat de Física, Universitat de Barcelona, Martí i Franqués 1, 08028 Barcelona, Spain.
Philomena OstapchukDepartment of Molecular Genetics and Microbiology, School of Medicine, Stony Brook University, Stony Brook, NY 11794-5222, USA.
Patrick HearingDepartment of Molecular Genetics and Microbiology, School of Medicine, Stony Brook University, Stony Brook, NY 11794-5222, USA.
Carmen San MartínDepartment of Macromolecular Structures, Centro Nacional de Biotecnología (CNB-CSIC), Madrid 28049, Spain.
Pedro J de PabloDepartment of Condensed Matter Physics, Universidad Autónoma de Madrid, Madrid 28049, Spain.
Centro Nacional de Biotecnología · ESStony Brook University · USUniversidad Autónoma de Madrid · ESInstitute of Physics · HRUniversitat de Barcelona · ES

Funding

Regulation of Nuclear Signaling Pathways by the Adenovirus E4-ORF3 ProteinR01CA122677 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI HEARING, PATRICK · 2007 to 2022
$5.2M
NCI NIH HHS R01 CA122677
6 · The paper itself

Abstract

Some viruses package dsDNA together with large amounts of positively charged proteins, thought to help condense the genome inside the capsid with no evidence. Further, this role is not clear because these viruses have typically lower packing fractions than viruses encapsidating naked dsDNA. In addition, it has recently been shown that the major adenovirus condensing protein (polypeptide VII) is dispensable for genome encapsidation. Here, we study the morphology and mechanics of adenovirus particles with (Ad5-wt) and without (Ad5-VII-) protein VII. Ad5-VII- particles are stiffer than Ad5-wt, but DNA-counterions revert this difference, indicating that VII screens repulsive DNA-DNA interactions. Consequently, its absence results in increased internal pressure. The core is slightly more ordered in the absence of VII and diffuses faster out of Ad5-VII- than Ad5-wt fractured particles. In Ad5-wt unpacked cores, dsDNA associates in bundles interspersed with VII-DNA clusters. These results indicate that protein VII condenses the adenovirus genome by combining direct clustering and promotion of bridging by other core proteins. This condensation modulates the virion internal pressure and DNA release from disrupted particles, which could be crucial to keep the genome protected inside the semi-disrupted capsid while traveling to the nuclear pore.

Indexed as

AdenoviridaeCapsid ProteinsDNA, ViralGenome, ViralHumansViral Core ProteinsViral ProteinsVirionVirus AssemblyCapsid ProteinsDNA, ViralViral Core ProteinsViral Proteins

Identifiers

PMID31396624
PMCPMC6755088
OpenAlexW2967430736

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.