Evidence map›Paper›PMID 31396181›Full record

ArticleFrontiers in microbiology2019

MicroRNA Expression Profiling in Newcastle Disease Virus-Infected DF-1 Cells by Deep Sequencing.

Yu Chen, Wen Liu, Haixu Xu, Jingjing Liu, Yonghuan Deng, Hao Cheng, Shanshan Zhu, Yuru Pei, Jiao Hu, Zenglei Hu and 5 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 19 citations in OpenAlex.

  1. Pooled it
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  8. Lnc90386 Sponges miR-33-5p to MediateFrontiers in immunology · 2022
    Article
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  10. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 1 institution in 1 country.

Yu ChenAnimal Infectious Disease Laboratory, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Wen LiuAnimal Infectious Disease Laboratory, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Haixu XuAnimal Infectious Disease Laboratory, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Jingjing LiuAnimal Infectious Disease Laboratory, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Yonghuan DengAnimal Infectious Disease Laboratory, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Hao ChengAnimal Infectious Disease Laboratory, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Shanshan ZhuAnimal Infectious Disease Laboratory, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Yuru PeiAnimal Infectious Disease Laboratory, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Jiao HuAnimal Infectious Disease Laboratory, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Zenglei HuAnimal Infectious Disease Laboratory, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Xiaowen LiuAnimal Infectious Disease Laboratory, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Xiaoquan WangAnimal Infectious Disease Laboratory, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Min GuAnimal Infectious Disease Laboratory, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Shunlin HuAnimal Infectious Disease Laboratory, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Xiufan LiuAnimal Infectious Disease Laboratory, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Yangzhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Newcastle disease virus (NDV), causative agent of Newcastle disease (ND), is one of the most devastating pathogens for poultry industry worldwide. MicroRNAs (miRNAs) are non-coding RNAs that regulate gene expression by regulating mRNA translation efficiency or mRNA abundance through binding to mRNA directly. Accumulating evidence has revealed that cellular miRNAs can also affect virus replication by controlling host-virus interaction. To identify miRNA expression profile and explore the roles of miRNA during NDV replication, in this study, small RNA deep sequencing was performed of non-inoculated DF-1 cells (chicken embryo fibroblast cell line) and JS 5/05-infected cells collected at 6 and 12 h post infection (hereafter called mock' NDV-6 h, and NDV-12 h groups respectively). A total of 73 miRNAs of NDV-6 h group and 64miRNAs of NDV-12 h group were significantly differentially expressed (SDE) when compared with those in mock group. Meanwhile, 50 SDE miRNAs, including 48 up- and 2 down-regulated, showed the same expression patterns in NDV-6 h and NDV-12 h groups. qRT-PCR validation of 15 selected miRNAs' expression patterns was consistent with deep sequencing. To investigate the role of these SDE miRNAs in NDV replication, miRNA mimics and inhibitors were transfected into DF-1 cells followed by NDV infection. The results revealed that gga-miR-451 and gga-miR-199-5p promoted NDV replication while gga-miR-19b-3p and gga-miR-29a-3p inhibited NDV replication. Further function research demonstrated gga-miR-451 suppressed NDV-induced inflammatory response

Indexed as

deep sequencingDF-1 cellsgga-miR-451miRNAs’ expression profileNDVYWHAZ

Identifiers

PMID31396181
PMCPMC6663980
OpenAlexW2954877772

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.