ArticleFrontiers in systems neuroscience2019
Scaling of a Large-Scale Simulation of Synchronous Slow-Wave and Asynchronous Awake-Like Activity of a Cortical Model With Long-Range Interconnections.
Article in Frontiers in systems neuroscience, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
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7 citing papers in PubMed.
- Simplified two-compartment neuron with calcium dynamics capturing brain-state specific apical-amplification, -isolation and -drive.Frontiers in computational neuroscience · 2025Article
- A modular and adaptable analysis pipeline to compare slow cerebral rhythms across heterogeneous datasets.Cell reports methods · 2024Article
- Simulations approaching data: cortical slow waves in inferred models of the whole hemisphere of mouse.Communications biology · 2023Article
- Fast Simulation of a Multi-Area Spiking Network Model of Macaque Cortex on an MPI-GPU Cluster.Frontiers in neuroinformatics · 2022Article
- Thalamo-cortical spiking model of incremental learning combining perception, context and NREM-sleep.PLoS computational biology · 2021Article
- Scaling of a Large-Scale Simulation of Synchronous Slow-Wave and Asynchronous Awake-Like Activity of a Cortical Model With Long-Range Interconnections.Frontiers in systems neuroscience · 2019Article
- Analysis Pipeline for Extracting Features of Cortical Slow Oscillations.Frontiers in systems neuroscience · 2019Article
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7 authors.
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Abstract
Cortical synapse organization supports a range of dynamic states on multiple spatial and temporal scales, from synchronous slow wave activity (SWA), characteristic of deep sleep or anesthesia, to fluctuating, asynchronous activity during wakefulness (AW). Such dynamic diversity poses a challenge for producing efficient large-scale simulations that embody realistic metaphors of short- and long-range synaptic connectivity. In fact, during SWA and AW different spatial extents of the cortical tissue are active in a given timespan and at different firing rates, which implies a wide variety of loads of local computation and communication. A balanced evaluation of simulation performance and robustness should therefore include tests of a variety of cortical dynamic states. Here, we demonstrate performance scaling of our proprietary Distributed and Plastic Spiking Neural Networks (DPSNN) simulation engine in both SWA and AW for bidimensional grids of neural populations, which reflects the modular organization of the cortex. We explored networks up to 192 × 192 modules, each composed of 1,250 integrate-and-fire neurons with spike-frequency adaptation, and exponentially decaying inter-modular synaptic connectivity with varying spatial decay constant. For the largest networks the total number of synapses was over 70 billion. The execution platform included up to 64 dual-socket nodes, each socket mounting 8 Intel Xeon Haswell processor cores @ 2.40 GHz clock rate. Network initialization time, memory usage, and execution time showed good scaling performances from 1 to 1,024 processes, implemented using the standard Message Passing Interface (MPI) protocol. We achieved simulation speeds of between 2.3 × 10
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