Evidence map›Paper›PMID 31395866›Full record

ArticleNature communications2019

Integrated TORC1 and PKA signaling control the temporal activation of glucose-induced gene expression in yeast.

Joseph Kunkel, Xiangxia Luo, Andrew P Capaldi

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
  2. Regulation of Translation by PKA Signaling Pathway.International journal of molecular sciences · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Predicting theLife (Basel, Switzerland) · 2025
    Article
  8. Article
  9. Multi-Omics Analysis Reveals Impacts of LincRNA Deletion on Yeast Protein Synthesis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. TOR Complex 1: Orchestrating Nutrient Signaling and Cell Cycle Progression.International journal of molecular sciences · 2023
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Joseph KunkelDepartment of Molecular and Cellular Biology, University of Arizona, Tucson, AZ, 85721-0206, USA.
Xiangxia LuoDepartment of Molecular and Cellular Biology, University of Arizona, Tucson, AZ, 85721-0206, USA.
Andrew P CapaldiDepartment of Molecular and Cellular Biology, University of Arizona, Tucson, AZ, 85721-0206, USA. capaldi@email.arizona.edu.
University of Arizona · US

Funding

GRADUATE TRAINING IN BIOCHEMISTRY AND MOLECULAR BIOLOGYT32GM008659 · NIGMS · UNIVERSITY OF ARIZONA · PI CAPALDI, ANDREW PAUL, WEINERT, TED A. · 1997 to 2019
$5.3M
Dissection of the TORC1 Signaling Network in YeastR01GM097329 · NIGMS · UNIVERSITY OF ARIZONA · PI CAPALDI, ANDREW PAUL · 2011 to 2024
$4.7M
Computational and Mathematical Modeling of Biomedical SystemsT32GM084905 · NIGMS · UNIVERSITY OF ARIZONA · PI SECOMB, TIMOTHY W. · 2009 to 2018
$2.2M
NIGMS NIH HHS R01 GM097329NIGMS NIH HHS T32 GM008659NIGMS NIH HHS T32 GM084905
6 · The paper itself

Abstract

The growth rate of a yeast cell is controlled by the target of rapamycin kinase complex I (TORC1) and cAMP-dependent protein kinase (PKA) pathways. To determine how TORC1 and PKA cooperate to regulate cell growth, we performed temporal analysis of gene expression in yeast switched from a non-fermentable substrate, to glucose, in the presence and absence of TORC1 and PKA inhibitors. Quantitative analysis of these data reveals that PKA drives the expression of key cell growth genes during transitions into, and out of, the rapid growth state in glucose, while TORC1 is important for the steady-state expression of the same genes. This circuit design may enable yeast to set an exact growth rate based on the abundance of internal metabolites such as amino acids, via TORC1, but also adapt rapidly to changes in external nutrients, such as glucose, via PKA.

Indexed as

Gene Expression Regulation, FungalCyclic AMP-Dependent Protein KinasesGene Expression ProfilingGlucoseSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSignal TransductionTranscription FactorsCyclic AMP-Dependent Protein KinasesGlucoseSaccharomyces cerevisiae ProteinsTORC1 protein complex, S cerevisiaeTranscription Factors

Identifiers

PMID31395866
PMCPMC6687784
OpenAlexW2965730273

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.