Evidence map›Paper›PMID 31395619›Full record

ArticleThe Journal of cell biology2019

Chromatin compartment dynamics in a haploinsufficient model of cardiac laminopathy.

Alessandro Bertero, Paul A Fields, Alec S T Smith, Andrea Leonard, Kevin Beussman, Nathan J Sniadecki, Deok-Ho Kim, Hung-Fat Tse, Lil Pabon, Jay Shendure and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 70 citations in OpenAlex.

  1. Review
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  8. Review
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  10. Article
  11. MAM-STAT3-Driven Mitochondrial CaAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  12. Review
  13. Review
  14. Cells · 2024
    Article
  15. Review
  16. Article
  17. Article
  18. Epigenetics.Advances in experimental medicine and biology · 2024
    Review
  19. Review
  20. Nuclear damage inMolecular biology of the cell · 2023
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Alessandro BerteroDepartment of Pathology, University of Washington, Seattle, WA.ORCID 0000-0002-4919-9087
Paul A FieldsDepartment of Pathology, University of Washington, Seattle, WA.ORCID 0000-0002-9608-6464
Alec S T SmithCenter for Cardiovascular Biology, University of Washington, Seattle, WA.
Andrea LeonardCenter for Cardiovascular Biology, University of Washington, Seattle, WA.
Kevin BeussmanCenter for Cardiovascular Biology, University of Washington, Seattle, WA.ORCID 0000-0003-2169-4104
Nathan J SniadeckiCenter for Cardiovascular Biology, University of Washington, Seattle, WA.ORCID 0000-0001-6960-4492
Deok-Ho KimCenter for Cardiovascular Biology, University of Washington, Seattle, WA.
Hung-Fat TseCardiology Division, Department of Medicine, University of Hong Kong, Pok Fu Lam, Hong Kong.
Lil PabonDepartment of Pathology, University of Washington, Seattle, WA.ORCID 0000-0003-3095-5011
Jay ShendureDepartment of Genome Sciences, University of Washington, Seattle, WA.
William S NobleDepartment of Genome Sciences, University of Washington, Seattle, WA.
Charles E MurryDepartment of Pathology, University of Washington, Seattle, WA murry@uw.edu.ORCID 0000-0003-3862-6773
University of Washington · USHoward Hughes Medical Institute · USUniversity of Hong Kong · HK

Funding

Self Renewal and Differentiation of Human Embryonic Stem CellsP01GM081619 · NIGMS · UNIVERSITY OF WASHINGTON · PI RUZZO, WALTER LAWRENCE · 2007 to 2017
$20.6M
EXPERIMENTAL PATHOLOGY OF CARDIOVASCULAR DISEASET32HL007312 · NHLBI · UNIVERSITY OF WASHINGTON · PI MAJESKY, MARK W., SCHWARTZ, STEPHEN MARK · 1985 to 2019
$11.8M
University of Washington Center for Nuclear Organization and FunctionU54DK107979 · NIDDK · UNIVERSITY OF WASHINGTON · PI NOBLE, WILLIAM STAFFORD, SHENDURE, JAY ASHOK · 2015 to 2019
$11.8M
Primate Heart RegenerationR01HL128362 · NHLBI · UNIVERSITY OF WASHINGTON · PI MURRY, CHARLES E · 2016 to 2019
$3.5M
DISEASE MODELING AND PHENOTYPIC DRUG SCREENING FOR DYSTROPHIC CARDIOMYOPATHYR01HL146436 · NHLBI · UNIVERSITY OF WASHINGTON · PI KIM, DEOK-HO · 2019 to 2022
$2.2M
A NANOPATTERNED MEA-BASED FUNCTIONAL PHENOTYPING ASSAY FOR DRUG-INDUCED CARDIOTOXICITY SCREENINGR01HL135143 · NHLBI · UNIVERSITY OF WASHINGTON · PI KIM, DEOK-HO · 2017 to 2021
$1.9M
Integrins, mechanotransduction, and the maturation of cardiomyocytes derived from induced pluripotent stem cellsF32HL126332 · NHLBI · UNIVERSITY OF WASHINGTON · PI LEONARD, ANDREA B · 2015 to 2017
$164k
NHLBI NIH HHS F32 HL126332NHLBI NIH HHS R01 HL128362NHLBI NIH HHS R01 HL135143NHLBI NIH HHS R01 HL146436NHLBI NIH HHS T32 HL007312NIDDK NIH HHS U54 DK107979NIGMS NIH HHS P01 GM081619
6 · The paper itself

Abstract

Mutations in A-type nuclear lamins cause dilated cardiomyopathy, which is postulated to result from dysregulated gene expression due to changes in chromatin organization into active and inactive compartments. To test this, we performed genome-wide chromosome conformation analyses in human induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CMs) with a haploinsufficient mutation for lamin A/C. Compared with gene-corrected cells, mutant hiPSC-CMs have marked electrophysiological and contractile alterations, with modest gene expression changes. While large-scale changes in chromosomal topology are evident, differences in chromatin compartmentalization are limited to a few hotspots that escape segregation to the nuclear lamina and inactivation during cardiogenesis. These regions exhibit up-regulation of multiple noncardiac genes including

Indexed as

Cardiomyopathy, DilatedChromatinChromatin Assembly and DisassemblyHaploinsufficiencyModels, CardiovascularCalcium ChannelsCalcium Channels, N-TypeHumansInduced Pluripotent Stem CellsLamininMyocytes, CardiacCACNA1A protein, humanCalcium ChannelsCalcium Channels, N-TypeChromatinLamininlaminin A

Identifiers

PMID31395619
PMCPMC6719452
OpenAlexW2967236133

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.