Evidence map›Paper›PMID 31394080›Full record

ArticleDevelopmental biology2019

Epigenetic factors Dnmt1 and Uhrf1 coordinate intestinal development.

Julia Ganz, Ellie Melancon, Catherine Wilson, Angel Amores, Peter Batzel, Marie Strader, Ingo Braasch, Parham Diba, Julie A Kuhlman, John H Postlethwait and 1 more

Open access · greenAbstract read
In one paragraph

Article in Developmental biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

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  8. Who's talking to whom: microbiome-enteric nervous system interactions in early life.American journal of physiology. Gastrointestinal and liver physiology · 2023
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  12. Development, Diversity, and Neurogenic Capacity of Enteric Glia.Frontiers in cell and developmental biology · 2021
    Review
  13. Frontiers in immunology · 2021
    Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Julia GanzInstitute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403, USA.
Ellie MelanconInstitute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403, USA.
Catherine WilsonInstitute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403, USA.
Angel AmoresInstitute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403, USA.
Peter BatzelInstitute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403, USA.
Marie StraderInstitute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403, USA.
Ingo BraaschInstitute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403, USA.
Parham DibaInstitute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403, USA.
Julie A KuhlmanDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011, USA.
John H PostlethwaitInstitute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403, USA.
Judith S EisenInstitute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403, USA. Electronic address: eisen@uoregon.edu.
University of Oregon · USIowa State University · US

Funding

Zebrafish FacilityP01HD022486 · NICHD · UNIVERSITY OF OREGON · PI PARTHASARATHY, RAGHUVEER · 1987 to 2017
$28.8M
Resources for Teleost Gene Duplicates and Human DiseaseR01OD011116 · OD · UNIVERSITY OF OREGON · PI POSTLETHWAIT, JOHN H. · 2012 to 2020
$5.4M
NICHD R25 Summer Research Program at the University of OregonR25HD070817 · NICHD · UNIVERSITY OF OREGON · PI EISEN, JUDITH S · 2011 to 2021
$1.1M
NICHD NIH HHS P01 HD022486NICHD NIH HHS R25 HD070817NIH HHS R01 OD011116
6 · The paper itself

Abstract

Intestinal tract development is a coordinated process involving signaling among the progenitors and developing cells from all three germ layers. Development of endoderm-derived intestinal epithelium has been shown to depend on epigenetic modifications, but whether that is also the case for intestinal tract cell types from other germ layers remains unclear. We found that functional loss of a DNA methylation machinery component, ubiquitin-like protein containing PHD and RING finger domains 1 (uhrf1), leads to reduced numbers of ectoderm-derived enteric neurons and severe disruption of mesoderm-derived intestinal smooth muscle. Genetic chimeras revealed that Uhrf1 functions both cell-autonomously in enteric neuron precursors and cell-non-autonomously in surrounding intestinal cells, consistent with what is known about signaling interactions between these cell types that promote one another's development. Uhrf1 recruits the DNA methyltransferase Dnmt1 to unmethylated DNA during replication. Dnmt1 is also expressed in enteric neurons and smooth muscle progenitors. dnmt1 mutants have fewer enteric neurons and disrupted intestinal smooth muscle compared to wildtypes. Because dnmt1;uhrf1 double mutants have a similar phenotype to dnmt1 and uhrf1 single mutants, Dnmt1 and Uhrf1 must function together during enteric neuron and intestinal muscle development. This work shows that genes controlling epigenetic modifications are important to coordinate intestinal tract development, provides the first demonstration that these genes influence development of the ENS, and advances uhrf1 and dnmt1 as potential new Hirschsprung disease candidates.

Indexed as

Epigenesis, GeneticAnimalsChimeraDNA (Cytosine-5-)-Methyltransferase 1Embryonic Stem CellsEnteric Nervous SystemFemaleGene Expression Regulation, DevelopmentalIntestinesMaleMuscle, SmoothMutationNeuronsTrans-ActivatorsZebrafishZebrafish ProteinsDNA (Cytosine-5-)-Methyltransferase 1Dnmt1 protein, zebrafishTrans-ActivatorsUhrf1 protein, zebrafishZebrafish ProteinsDNA methylationEnteric nervous systemHirschsprung diseaseIntestinal developmentIntestinal epitheliumIntestinal smooth muscle

Identifiers

PMID31394080
PMCPMC6842436
OpenAlexW2965628089

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.