Evidence map›Paper›PMID 31393866›Full record

ArticlePLoS biology2019

Tagger-A Swiss army knife for multiomics to dissect cell type-specific mechanisms of gene expression in mice.

Lech Kaczmarczyk, Vikas Bansal, Ashish Rajput, Raza-Ur Rahman, Wiesław Krzyżak, Joachim Degen, Stefanie Poll, Martin Fuhrmann, Stefan Bonn, Walker Scot Jackson

Erratum issuedAbstract read
In one paragraph

Article in PLoS biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. DNA G-Quadruplex Is a Transcriptional Control Device That Regulates Memory.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Neuronal Adenosine AFrontiers in cellular neuroscience · 2022
    Article
  10. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Lech KaczmarczykWallenberg Center for Molecular Medicine, Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.
Vikas BansalInstitute for Medical Systems Biology, Center for Molecular Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.ORCID 0000-0002-0944-7226
Ashish RajputInstitute for Medical Systems Biology, Center for Molecular Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.ORCID 0000-0002-6741-8861
Raza-Ur RahmanInstitute for Medical Systems Biology, Center for Molecular Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.ORCID 0000-0002-7019-5486
Wiesław KrzyżakLife & Medical Sciences Institute, University of Bonn, Bonn, Germany.
Joachim DegenLife & Medical Sciences Institute, University of Bonn, Bonn, Germany.ORCID 0000-0003-1510-8754
Stefanie PollGerman Center for Neurodegenerative Diseases, Bonn, Germany.ORCID 0000-0001-5301-2791
Martin FuhrmannGerman Center for Neurodegenerative Diseases, Bonn, Germany.
Stefan BonnInstitute for Medical Systems Biology, Center for Molecular Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
Walker Scot JacksonWallenberg Center for Molecular Medicine, Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.ORCID 0000-0002-3003-5509

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A deep understanding of how regulation of the multiple levels of gene expression in mammalian tissues give rise to complex phenotypes has been impeded by cellular diversity. A handful of techniques were developed to tag-select nucleic acids of interest in specific cell types, thereby enabling their capture. We expanded this strategy by developing the Tagger knock-in mouse line bearing a quad-cistronic transgene combining enrichment tools for nuclei, nascent RNA, translating mRNA, and mature microRNA (miRNA). We demonstrate that Tagger can capture the desired nucleic acids, enabling multiple omics approaches to be applied to specific cell types in vivo using a single transgenic mouse line.

Indexed as

AnimalsCloning, MolecularGene ExpressionGene Expression ProfilingGene Expression RegulationGene Knock-In TechniquesGenomicsMiceMice, Inbred C57BLMice, TransgenicMicroRNAsNucleic AcidsProteomicsRNA, MessengerTranscriptomeTransgenesMicroRNAsNucleic AcidsRNA, Messenger

Identifiers

PMID31393866
PMCPMC6701817

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.