Evidence map›Paper›PMID 31393856›Full record

ArticleThe Journal of clinical investigation2019

Hotspot SF3B1 mutations induce metabolic reprogramming and vulnerability to serine deprivation.

W Brian Dalton, Eric Helmenstine, Noel Walsh, Lukasz P Gondek, Dhanashree S Kelkar, Abigail Read, Rachael Natrajan, Eric S Christenson, Barbara Roman, Samarjit Das and 22 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Distinct and convergent effects ofProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Elevated BBlood neoplasia · 2025
    Article
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  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Science advances · 2024
    Article
  18. Article
  19. Life science alliance · 2023
    Article
  20. ASCT2 is the primary serine transporter in cancer cells.bioRxiv : the preprint server for biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 8 institutions in 4 countries.

W Brian DaltonDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Eric HelmenstineDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Noel WalshDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Lukasz P GondekDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Dhanashree S KelkarMcKusick-Nathans Institute of Genetic Medicine, Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Abigail ReadThe Breast Cancer Now Toby Robins Research Centre, The Institute of Cancer Research, London, United Kingdom.
Rachael NatrajanThe Breast Cancer Now Toby Robins Research Centre, The Institute of Cancer Research, London, United Kingdom.
Eric S ChristensonDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Barbara RomanDepartment of Pathology, Cardiovascular Division.
Samarjit DasDepartment of Pathology, Cardiovascular Division.
Liang ZhaoBloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins School of Medicine, Baltimore, Maryland, USA.
Robert D LeoneBloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins School of Medicine, Baltimore, Maryland, USA.
Daniel ShinnDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Taylor GroginskiDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Anil K MadugunduMcKusick-Nathans Institute of Genetic Medicine, Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Arun PatilMcKusick-Nathans Institute of Genetic Medicine, Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Daniel J ZabranskyDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Arielle MedfordDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Justin LeeDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Alex J ColeDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Marc RosenDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Maya ThakarDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Alexander AmbinderDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Joshua DonaldsonDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Amy E DeZernDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Karen CraveroDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
David ChuDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Rafael Madero-MarroquinDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Akhilesh PandeyDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Paula J HurleyDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Josh LauringDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Ben Ho ParkDepartment of Oncology, The Sidney Kimmel Comprehensive Cancer Center, and.
Sidney Kimmel Comprehensive Cancer Center · USJohns Hopkins University · USBloomberg (United States) · USCardiovascular Research Center · BRInstitute of Cancer Research · GBHarvard University · USJanssen (United States) · USSt. Luke's-Roosevelt Hospital Center · US

Funding

Vanderbilt Clinical Oncology Research Career Development ProgramK12CA090625 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Debra L. Friedman, Paula Jill Hurley · 2001 to 2026
$16.9M
Training Program in Cellular and Molecular MedicineT32GM008752 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI RAO, RAJINI · 2000 to 2019
$11.7M
Circulating plasma tumor DNA as a biomarker for early stage breast cancerR01CA194024 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI PARK, BEN HO · 2016 to 2020
$1.9M
Molecular complete response in blood as a predictor for pathologic complete response after neoadjuvant therapy for breast cancerR01CA214494 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI PARK, BEN HO · 2018 to 2023
$1.1M
Hedgehog Signaling in the Progression of Myelodysplastic SyndromesK08HL136894 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI GONDEK, LUKASZ PAWEL · 2017 to 2021
$859k
NCI NIH HHS K12 CA090625NCI NIH HHS R01 CA194024NCI NIH HHS R01 CA214494NHLBI NIH HHS K08 HL136894NIGMS NIH HHS T32 GM008752
6 · The paper itself

Abstract

Cancer-associated mutations in the spliceosome gene SF3B1 create a neomorphic protein that produces aberrant mRNA splicing in hundreds of genes, but the ensuing biologic and therapeutic consequences of this missplicing are not well understood. Here we have provided evidence that aberrant splicing by mutant SF3B1 altered the transcriptome, proteome, and metabolome of human cells, leading to missplicing-associated downregulation of metabolic genes, decreased mitochondrial respiration, and suppression of the serine synthesis pathway. We also found that mutant SF3B1 induces vulnerability to deprivation of the nonessential amino acid serine, which was mediated by missplicing-associated downregulation of the serine synthesis pathway enzyme PHGDH. This vulnerability was manifest both in vitro and in vivo, as dietary restriction of serine and glycine in mice was able to inhibit the growth of SF3B1MUT xenografts. These findings describe a role for SF3B1 mutations in altered energy metabolism, and they offer a new therapeutic strategy against SF3B1MUT cancers.

Indexed as

Cellular ReprogrammingMutationNeoplasmsPhosphoproteinsRNA Splicing FactorsSerineTranscriptomeAnimalsCell Line, TumorEnergy MetabolismGlycineHumansMiceNeoplasm ProteinsPhosphoglycerate DehydrogenaseProteomeGlycineNeoplasm ProteinsPhosphoglycerate DehydrogenasePhosphoproteinsProteomeRNA Splicing FactorsSerineSF3B1 protein, humanAmino acid metabolismCancerMetabolismOncology

Identifiers

PMID31393856
PMCPMC6819102
OpenAlexW2968702355

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.