Evidence map›Paper›PMID 31393094›Full record

Trial reportMolecular genetics & genomic medicine2019

SLC12A ion transporter mutations in sporadic and familial human congenital hydrocephalus.

Sheng Chih Jin, Charuta G Furey, Xue Zeng, August Allocco, Carol Nelson-Williams, Weilai Dong, Jason K Karimy, Kevin Wang, Shaojie Ma, Eric Delpire and 1 more

Open access · goldAbstract readClinical Trial
In one paragraph

Trial report in Molecular genetics & genomic medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
6.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Review
  4. The role ofJournal of pharmaceutical analysis · 2023
    Review
  5. Article
  6. Article
  7. The Important Role of Ion Transport System in Cervical Cancer.International journal of molecular sciences · 2021
    Review
  8. Genomics of human congenital hydrocephalus.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2021
    Article
  9. Review
  10. Article
  11. Review
  12. Charging Up the Periphery: Glial Ionic Regulation in Sensory Perception.Frontiers in cell and developmental biology · 2021
    Review
  13. Review
  14. Article
  15. Article
  16. Modulation of brain cation-ClNature communications · 2020
    Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Sheng Chih JinDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.ORCID 0000-0002-5777-7262
Charuta G FureyDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.
Xue ZengDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.
August AlloccoDepartment of Neurosurgery, Yale University School of Medicine, New Haven, CT, USA.
Carol Nelson-WilliamsDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.
Weilai DongDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.
Jason K KarimyDepartment of Neurosurgery, Yale University School of Medicine, New Haven, CT, USA.ORCID 0000-0003-1526-5135
Kevin WangDepartment of Neurosurgery, Yale University School of Medicine, New Haven, CT, USA.
Shaojie MaDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.
Eric DelpireDepartment of Anesthesiology, Vanderbilt University School of Medicine, Nashville, TN, USA.
Kristopher T KahleDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.
Yale University · USVanderbilt University · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
OXGR1 in Renal Intercalated Cells, Salt Transport and Diuretic EfficacyR01DK110375 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Eric J Delpire, SUSAN MARIE WALL · 2017 to 2026
$6.7M
Modulation of Choroid Plexus Immuno-secretory Function to Restore Cerebrospinal Fluid Homeostasis in HydrocephalusR01NS109358 · NINDS · YALE UNIVERSITY · PI Kristopher T. Kahle · 2018 to 2026
$2.4M
Integrative Genomic Analysis of Congenital Heart DiseaseK99HL143036 · NHLBI · ROCKEFELLER UNIVERSITY · PI JIN, SHENG CHIH · 2019 to 2019
$178k
NCATS NIH HHS UL1 TR001863NHLBI NIH HHS K99 HL143036NIDDK NIH HHS R01 DK110375NINDS NIH HHS R01 NS109358
6 · The paper itself

Abstract

backgroundCongenital hydrocephalus (CH) is a highly morbid disease that features enlarged brain ventricles and impaired cerebrospinal fluid homeostasis. Although early linkage or targeted sequencing studies in large multigenerational families have localized several genes for CH, the etiology of most CH cases remains unclear. Recent advances in whole exome sequencing (WES) have identified five new bona fide CH genes, implicating impaired regulation of neural stem cell fate in CH pathogenesis. Nonetheless, in the majority of CH cases, the pathological etiology remains unknown, suggesting more genes await discovery.

methodsWES of family members of a sporadic and familial form of severe L1CAM mutation-negative CH associated with aqueductal stenosis was performed. Rare genetic variants were analyzed, prioritized, and validated. De novo copy number variants (CNVs) were identified using the XHMM algorithm and validated using qPCR. Xenopus oocyte experiments were performed to access mutation impact on protein function and expression.

resultsA novel inherited protein-damaging mutation (p.Pro605Leu) in SLC12A6, encoding the K

conclusionThese findings identify two novel, related genes associated with CH, and implicate genetically encoded impairments in ion transport for the first time in CH pathogenesis.

Indexed as

MutationAnimalsCerebral AqueductExome SequencingGenetic Diseases, X-LinkedHumansHydrocephalusK Cl- CotransportersMaleNeural Cell Adhesion Molecule L1SymportersXenopus laevisK Cl- CotransportersL1CAM protein, humanNeural Cell Adhesion Molecule L1SLC12A6 protein, humanSLC12A7 protein, humanSymportershydrocephalusKCC3KCC4SLC12A6SLC12A7whole exome sequencing

Identifiers

PMID31393094
PMCPMC6732308
OpenAlexW2968283321

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.