Evidence map›Paper›PMID 31392612›Full record

ArticleEnvironmental science and pollution research international2019

Metagenomic analysis of drinking water samples collected from treatment plants of Hyderabad City and Mehran University Employees Cooperative Housing Society.

Junaid Ahmed Kori, Rasool Bux Mahar, Muhammad Raffae Vistro, Huma Tariq, Ishtiaq Ahmad Khan, Ramesh Goel

Abstract read
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In one paragraph

Article in Environmental science and pollution research international, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Clean and Safe Drinking Water SystemsFrontiers in microbiology · 2022
    Review
  3. Article
  4. Emerging priorities for microbial metagenome research.Bioresource technology reports · 2020
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Junaid Ahmed KoriU.S.-Pakistan Center for Advanced Studies in Water, Mehran University of Engineering and Technology, Jamshoro, 76062, Pakistan.
Rasool Bux MaharU.S.-Pakistan Center for Advanced Studies in Water, Mehran University of Engineering and Technology, Jamshoro, 76062, Pakistan. rbmahar.uspcasw@faculty.muet.edu.pk.
Muhammad Raffae VistroU.S.-Pakistan Center for Advanced Studies in Water, Mehran University of Engineering and Technology, Jamshoro, 76062, Pakistan.
Huma TariqU.S.-Pakistan Center for Advanced Studies in Water, Mehran University of Engineering and Technology, Jamshoro, 76062, Pakistan.
Ishtiaq Ahmad KhanJamil-ur-Rahman Center for Genome Research, Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, 75270, Pakistan.
Ramesh GoelDepartment of Civil and Environmental Engineering, University of Utah, Salt Lake City, 84112-0561, USA.
Mehran University of Engineering and Technology · PKUniversity of Karachi · PKUniversity of Utah · US

Funding

Higher Education Commission, Pakistan (PK) -
6 · The paper itself

Abstract

The quality assessment of water, supplied to the end user, is an essential part to assess the physical, chemical, and biological status of water, which impacts on human health. For the quality assessment of drinking water treatment plants and distribution systems of Hyderabad City and Mehran University of Engineering and Technology, Jamshoro, Pakistan, 13 surface drinking water samples were collected from three treatment plants, two of Hyderabad City, including WASA treatment plant and its distribution system (n = 5), Hala Nakka treatment plant and its distribution system (n = 6), and Mehran University Employees Cooperative Housing Society (MUECHS) treatment plant and its distribution system (n = 2). Physicochemical parameters of all drinking water samples were in the range compared to EPA and WHO guidelines, except in L-12 sample. Notably, no free-chlorine was detected in all samples. In metagenomics analysis, targeting V3-V4 hypervariable region of 16S rRNA gene, in QIIME2 environment, high bacterial prevalence was observed in all samples. On average, 348 OTUs were observed per sample. Among all samples, treated water sample from the Hala Nakka Treatment Plant (HNTR) was the most diverse sample in bacterial composition (Shannon 7.51 and Simpsons reciprocal indices 0.98). Overall, Proteobacteria, Bacteroidetes, Cyanobacteria, Verrucomicrobia, and Actinobacteria were the five most abundant phyla (relative abundances of 43.6, 37.9, 8.5, 2.5, and 2.4 percent, respectively). Notably, Cyanobacteria are well-known toxin producers which effect the human, and animal health. At genus level, Flavobacterium (4.86%) and Aquirestis (3.77%) were the most abundant genera. Functional predictions, based on 16S rRNA gene by PICRUSt, predicted 6909 KEGG orthologies, relating to 245 KEGG pathways. Among the predicted pathways of KEGG orthologies, pathways to human infections were also found. In conclusion, this study gave a deep insight into bacterial contamination in drinking water samples of Hyderabad City and MUECHS treatment plants and water quality status in Hyderabad and Mehran University of Engineering and Technology.

Indexed as

Environmental MonitoringMetagenomeWater PurificationActinobacteriaBacteroidetesChlorineCitiesCyanobacteriaDrinking WaterHousingHumansMetagenomicsPakistanProteobacteriaRNA, Ribosomal, 16SUniversitiesChlorineDrinking WaterRNA, Ribosomal, 16SBioinformaticsDrinking water distribution system (DWDS)MetagenomicsNext generation sequencingPICRUStWater quality

Identifiers

PMID31392612
OpenAlexW2965152663

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.