Evidence map›Paper›PMID 31392536›Full record

ArticleMolecular biology reports2019

CRISPR/Cas9-mediated gfp gene inactivation in Arabidopsis suspension cells.

Natalya V Permyakova, Yury V Sidorchuk, Tatyana V Marenkova, Sofya A Khozeeva, Vitaly V Kuznetsov, Alla A Zagorskaya, Sergei M Rozov, Elena V Deineko

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular biology reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Enhancing Withanolide Production in thePlants (Basel, Switzerland) · 2024
    Review
  2. Evaluation of CRISPR/Cas9 Constructs in Wheat Cell Suspension Cultures.International journal of molecular sciences · 2023
    Article
  3. 3 Biotech · 2022
    Article
  4. Review
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Natalya V PermyakovaFederal Research Center Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences, pr. Lavrentieva 10, Novosibirsk, Russia, 630090. puh@bionet.nsc.ru.ORCID http://orcid.org/0000-0001-9291-1343
Yury V SidorchukFederal Research Center Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences, pr. Lavrentieva 10, Novosibirsk, Russia, 630090.
Tatyana V MarenkovaFederal Research Center Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences, pr. Lavrentieva 10, Novosibirsk, Russia, 630090.
Sofya A KhozeevaFederal Research Center Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences, pr. Lavrentieva 10, Novosibirsk, Russia, 630090.
Vitaly V KuznetsovFederal Research Center Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences, pr. Lavrentieva 10, Novosibirsk, Russia, 630090.
Alla A ZagorskayaFederal Research Center Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences, pr. Lavrentieva 10, Novosibirsk, Russia, 630090.
Sergei M RozovFederal Research Center Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences, pr. Lavrentieva 10, Novosibirsk, Russia, 630090.
Elena V DeinekoFederal Research Center Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences, pr. Lavrentieva 10, Novosibirsk, Russia, 630090.
Institute of Cytology and Genetics · RU

Funding

Russian Science Foundation 17-14-01099
6 · The paper itself

Abstract

Targeted genome editing using CRISPR/Cas9 is a promising technology successfully verified in various plant species; however, it has hardly been used in plant cell suspension cultures. Here, we describe a successful knockout of a green fluorescent protein (gfp) reporter gene in Arabidopsis cell culture. We transformed seven transgenic suspension cell lines carrying one to three gfp gene copies with a binary vector containing genes coding for Cas9 and guide RNAs targeting the gfp gene. We detected the site-specific mutations by restriction analysis of a gfp amplicon. DNA sequencing of the PCR products confirmed high diversity of insertion-deletion mutations in the cell lines after the editing. We also analyzed gfp mRNA expression by real-time PCR and observed a decrease in gfp transcription after the target site modification. We can conclude that the CRISPR/Cas9 system can be successfully used for introducing site-specific mutations into the genome of cultured suspension cells of Arabidopsis.

Indexed as

ArabidopsisGene SilencingCell Culture TechniquesCells, CulturedCRISPR-Cas SystemsDNA, PlantGenes, ReporterGreen Fluorescent ProteinsMutagenesis, Site-DirectedMutationSequence Analysis, DNADNA, PlantGreen Fluorescent ProteinsArabidopsis thalianaCRISPR/Cas9gfpPlant cell suspension culture

Identifiers

PMID31392536
OpenAlexW2966280311

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.