Evidence map›Paper›PMID 31392389›Full record

ReviewCurrent genetics2020

Rejuvenation of ribosomal RNA gene repeats at the nuclear pore.

Chihiro Horigome, Takehiko Kobayashi

Abstract readReview
PubMed Publisher
In one paragraph

Review in Current genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Chihiro HorigomeLaboratory of Genome Regeneration, Institute for Quantitative Biosciences (IQB), The University of Tokyo, Tokyo, Japan. horigome@iam.u-tokyo.ac.jp.
Takehiko KobayashiLaboratory of Genome Regeneration, Institute for Quantitative Biosciences (IQB), The University of Tokyo, Tokyo, Japan. tako2015@iam.u-tokyo.ac.jp.
The University of Tokyo · JP

Funding

Japan Society for the Promotion of Science JP16K20987Japan Society for the Promotion of Science JP17H01443Japan Society for the Promotion of Science JP18K06056
6 · The paper itself

Abstract

The ribosomal RNA genes (rDNA) exist as tandem repeats in eukaryotes and are, therefore, highly unstable. Each rDNA unit includes a replication fork barrier site to avoid collisions between DNA replication forks and transcriptional machinery. However, because of this barrier, DNA double-strand breaks are induced at a relatively high frequency. If damage is repaired by the homologous recombination in rDNAs, it may result in frequent copy number changes and the production of extrachromosomal ribosomal DNA circles, both of which are closely linked to the regulation of lifespan. Here, we review recent progress in elucidating a multi-layered repair process of rDNA that occurs in the nucleolus, nucleoplasm and nuclear pores. Binding to nuclear pores appears to be the final strategy for repairing any remaining damage to the rDNA. Here, we propose the possible contribution of nuclear pores to the asymmetric distribution of damaged rDNA between mother and daughter cells as well as its possible impact on aging/rejuvenation.

Indexed as

Gene DuplicationGenes, rRNATandem Repeat SequencesAgingAnimalsDNA Breaks, Double-StrandedDNA ReplicationGenomic InstabilityHumansLongevityNuclear PoreRejuvenationAgingAsymmetric cell divisionDNA damage checkpointDNA double-strand breakNuclear poreRejuvenationRibosomal RNA gene (rDNA)

Identifiers

PMID31392389
OpenAlexW2966163114

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.