Evidence map›Paper›PMID 31390575›Full record

ArticleCell reports2019

Landscape of the Plasmodium Interactome Reveals Both Conserved and Species-Specific Functionality.

Charles Hillier, Mercedes Pardo, Lu Yu, Ellen Bushell, Theo Sanderson, Tom Metcalf, Colin Herd, Burcu Anar, Julian C Rayner, Oliver Billker and 1 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed, 1 pooled it
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 1 synthesis or guideline pooled it, 82 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Biogenesis of CytochromesACS infectious diseases · 2025
    Article
  13. Article
  14. Ectopic overexpression ofMicrobiology spectrum · 2025
    Article
  15. Article
  16. eLife · 2024
    Article
  17. ThemSphere · 2024
    Article
  18. Review
  19. Biogenesis of cytochromesbioRxiv : the preprint server for biology · 2024
    Article
  20. AeLife · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Charles HillierDevelopmental Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany.
Mercedes PardoFunctional Proteomics, The Institute of Cancer Research, London SW7 3RP, UK. Electronic address: mercedes.pardocalvo@icr.ac.uk.
Lu YuFunctional Proteomics, The Institute of Cancer Research, London SW7 3RP, UK.
Ellen BushellDepartment of Molecular Biology, The Laboratory for Molecular Infection Medicine Sweden, Umeå University, 901 87 Umeå, Sweden.
Theo SandersonWellcome Sanger Institute, Wellcome Genome Campus, Cambridge CB10 1SA, UK.
Tom MetcalfWellcome Sanger Institute, Wellcome Genome Campus, Cambridge CB10 1SA, UK.
Colin HerdWellcome Sanger Institute, Wellcome Genome Campus, Cambridge CB10 1SA, UK.
Burcu AnarWellcome Sanger Institute, Wellcome Genome Campus, Cambridge CB10 1SA, UK.
Julian C RaynerWellcome Sanger Institute, Wellcome Genome Campus, Cambridge CB10 1SA, UK.
Oliver BillkerDepartment of Molecular Biology, The Laboratory for Molecular Infection Medicine Sweden, Umeå University, 901 87 Umeå, Sweden. Electronic address: oliver.billker@umu.se.
Jyoti S ChoudharyFunctional Proteomics, The Institute of Cancer Research, London SW7 3RP, UK. Electronic address: jyoti.choudhary@icr.ac.uk.
Wellcome Sanger Institute · GBInstitute of Cancer Research · GBUmeå University · SEEuropean Molecular Biology Laboratory · DE

Funding

Wellcome Trust 206194/Z/17/ZWellcome Trust 210918/Z/18/Z
6 · The paper itself

Abstract

Malaria represents a major global health issue, and the identification of new intervention targets remains an urgent priority. This search is hampered by more than one-third of the genes of malaria-causing Plasmodium parasites being uncharacterized. We report a large-scale protein interaction network in Plasmodium schizonts, generated by combining blue native-polyacrylamide electrophoresis with quantitative mass spectrometry and machine learning. This integrative approach, spanning 3 species, identifies >20,000 putative protein interactions, organized into 600 protein clusters. We validate selected interactions, assigning functions in chromatin regulation to previously unannotated proteins and suggesting a role for an EELM2 domain-containing protein and a putative microrchidia protein as mechanistic links between AP2-domain transcription factors and epigenetic regulation. Our interactome represents a high-confidence map of the native organization of core cellular processes in Plasmodium parasites. The network reveals putative functions for uncharacterized proteins, provides mechanistic and structural insight, and uncovers potential alternative therapeutic targets.

Indexed as

AnimalsElectrophoresis, Polyacrylamide GelFemaleMicePlasmodiumPlasmodium falciparumProtein Interaction MapsProtozoan ProteinsRatsSpecies SpecificityTandem Mass SpectrometryProtozoan Proteinsblue native-PAGEinteraction networkinteractomemalariaPlasmodiumPlasmodium bergheiPlasmodium falciparumPlasmodium knowlesiprotein-protein interactions

Identifiers

PMID31390575
PMCPMC6693557
OpenAlexW2965021553

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.